PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027166952.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1002aa MW: 110029 Da PI: 5.0537

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027166952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.2e-28	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF +++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_027166952.1 598 AEKHVSLSVLQQYFCGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 649 5899**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence
MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD 60 QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGVEDKM IRQDLENRFH 120 VPMDTASEGV DLTGRNDKSC KQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG 180 GILAQVWIPI RDGNRYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF 240 ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ 300 PHFDLEMDSV CRALQAVNLR SAAPPRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL 360 TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDRSMEGFV HVCMEHYLEE 420 GQGIAGKALQ SNHPFFFPDV KDYHISEYPL VHHARKFNLN AAVAIRLRST YTGDDDYILE 480 FFLPVNMRGS SEQQLLLNNL SSTMQRICRS LRTVSDAELI GGDDIKVELP NRSVNNLPTT 540 ALPRNCSQQS LLNSNSSSSD HLFSGTSETK SSHKGDTASG EQAMAGPKRQ SEKKRSTAEK 600 HVSLSVLQQY FCGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLKKIQSVL 660 DSVQGVEGGL KFDPATGGLL AGGSVIQDFD TRKGMLCPVK SASLRNPDSL TQDTTSACQT 720 YCMDGENSVV KMEECDMDAI EVQNANMLSP NSRKEASKLQ SSTVVCCNDA KLAALDAGQS 780 QPASPWPYSG NASLDSYLKK SSDKEWCLNG DRQKLDKSDH QLVSLSSSSL VVVDEIEAKM 840 KSDNGLDGDD GGLEYNQPTS SSMTESSNGS GSMMNGSSSS SRNFGEQKHS KNESNFGDSS 900 SKLTAKATYK DDTIRFKFDP SAGCLQLYEE ISKRFKLQLG VFQLKYLDDE EEWVMLVSDA 960 DLQECLEILD FLGTRTVKFL VRDTPQTIGS SGSSNCYLTG GS

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence

MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD  60
QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGVEDKM IRQDLENRFH  120
VPMDTASEGV DLTGRNDKSC KQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG  180
GILAQVWIPI RDGNRYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF  240
ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ  300
PHFDLEMDSV CRALQAVNLR SAAPPRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL  360
TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDRSMEGFV HVCMEHYLEE  420
GQGIAGKALQ SNHPFFFPDV KDYHISEYPL VHHARKFNLN AAVAIRLRST YTGDDDYILE  480
FFLPVNMRGS SEQQLLLNNL SSTMQRICRS LRTVSDAELI GGDDIKVELP NRSVNNLPTT  540
ALPRNCSQQS LLNSNSSSSD HLFSGTSETK SSHKGDTASG EQAMAGPKRQ SEKKRSTAEK  600
HVSLSVLQQY FCGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLKKIQSVL  660
DSVQGVEGGL KFDPATGGLL AGGSVIQDFD TRKGMLCPVK SASLRNPDSL TQDTTSACQT  720
YCMDGENSVV KMEECDMDAI EVQNANMLSP NSRKEASKLQ SSTVVCCNDA KLAALDAGQS  780
QPASPWPYSG NASLDSYLKK SSDKEWCLNG DRQKLDKSDH QLVSLSSSSL VVVDEIEAKM  840
KSDNGLDGDD GGLEYNQPTS SSMTESSNGS GSMMNGSSSS SRNFGEQKHS KNESNFGDSS  900
SKLTAKATYK DDTIRFKFDP SAGCLQLYEE ISKRFKLQLG VFQLKYLDDE EEWVMLVSDA  960
DLQECLEILD FLGTRTVKFL VRDTPQTIGS SGSSNCYLTG GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein