PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165524.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 888aa MW: 98308.7 Da PI: 8.9848

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69	9.1e-22	802	882	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++r++ k +++lWee+s+++ ++g++rsp qCk+ w +l ++y++ k+ +k++ +++pyfd+++ XP_027165524.1 802 KWKPEEIKKLIRMRGELHNRFQVVKGRMALWEEISSNLLSGGISRSPGQCKSLWASLVQKYEESKTDSKSG-----EKWPYFDDMN 882 7******************************************************************97.....78****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MAAISFSAVS LYPYAHKGSL FLAANPNPSR QCISCCGPSH STSTIGSRGG SREPRKRSRG 60 RAEGPRKSME DSVQRKMEQF YEGSDGPPLR VLPIGGLGEI GMNCMLVGNF DRYILIDAGV 120 MFPGYDELGV QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DARTPIFASS 180 FTMELIKKRL KEFGIFIPSR LKIFKTKMRF VAGPFEVEPI RVTHSIPDCC GLVLRCADGT 240 ILHTGDWKID ETPLDGKVFD RGALEELSKE GVTLMMSDST NVLSPGRTLS ETVVADALLR 300 RISAAKGRVI TTQFASNIHR LGSVKAAADL TGRKLVFVGM ALRTYLDAAW KDGKAPIDPS 360 TLVKVEDIDS YSPKDLLIVT TGSQAEPRAA LNLASYGSSH SLKLTQEDLI LYSAKVIPGN 420 ETRVMKMLNR ISEIGSAIVM GKNEYLHSSG HAHREELDEV LKIVKPQHFL PIHGELLFLK 480 EHELLGKSTG IRHTVVIKNG EMLGVSHLRN RRVLSNGFTS LGKENLQLMY SDGDKAFGTS 540 TELCIDERLR IASDGIIVIS MEILRPQASN SLTEKTLKGK IKITTRCLWL DKGKLLDALH 600 KAAHAALSSC PVNSPLVHME RTVSEVLRKV VRKYSSKRPE VIAIALENPA GVLADDINGK 660 LSERSRVGLG ISTLRKAVDG HQRKRRPNGA QEVDDSDSHA HLRSIMQQDL EDNEMDFDKL 720 LSKDEANSVS TSSEAFSSNG AESDNFWKSF VQIPTNNVLE EGNTSLQLQK EHYENSEIDS 780 GELDSGLPKS ELKSSKSVKP NKWKPEEIKK LIRMRGELHN RFQVVKGRMA LWEEISSNLL 840 SGGISRSPGQ CKSLWASLVQ KYEESKTDSK SGEKWPYFDD MNKIFVRH

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MAAISFSAVS LYPYAHKGSL FLAANPNPSR QCISCCGPSH STSTIGSRGG SREPRKRSRG  60
RAEGPRKSME DSVQRKMEQF YEGSDGPPLR VLPIGGLGEI GMNCMLVGNF DRYILIDAGV  120
MFPGYDELGV QKIIPDTTFI KKWSHKIEAV VITHGHEDHI GALPWVIPAL DARTPIFASS  180
FTMELIKKRL KEFGIFIPSR LKIFKTKMRF VAGPFEVEPI RVTHSIPDCC GLVLRCADGT  240
ILHTGDWKID ETPLDGKVFD RGALEELSKE GVTLMMSDST NVLSPGRTLS ETVVADALLR  300
RISAAKGRVI TTQFASNIHR LGSVKAAADL TGRKLVFVGM ALRTYLDAAW KDGKAPIDPS  360
TLVKVEDIDS YSPKDLLIVT TGSQAEPRAA LNLASYGSSH SLKLTQEDLI LYSAKVIPGN  420
ETRVMKMLNR ISEIGSAIVM GKNEYLHSSG HAHREELDEV LKIVKPQHFL PIHGELLFLK  480
EHELLGKSTG IRHTVVIKNG EMLGVSHLRN RRVLSNGFTS LGKENLQLMY SDGDKAFGTS  540
TELCIDERLR IASDGIIVIS MEILRPQASN SLTEKTLKGK IKITTRCLWL DKGKLLDALH  600
KAAHAALSSC PVNSPLVHME RTVSEVLRKV VRKYSSKRPE VIAIALENPA GVLADDINGK  660
LSERSRVGLG ISTLRKAVDG HQRKRRPNGA QEVDDSDSHA HLRSIMQQDL EDNEMDFDKL  720
LSKDEANSVS TSSEAFSSNG AESDNFWKSF VQIPTNNVLE EGNTSLQLQK EHYENSEIDS  780
GELDSGLPKS ELKSSKSVKP NKWKPEEIKK LIRMRGELHN RFQVVKGRMA LWEEISSNLL  840
SGGISRSPGQ CKSLWASLVQ KYEESKTDSK SGEKWPYFDD MNKIFVRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein