PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165307.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 411aa MW: 44377.5 Da PI: 8.7886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.4e-11	337	382	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq XP_027165307.1 337 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 382 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MYPSSTSSSS QGSMGPNGGS STGGLIRYGS APSSLLATAA DSVTNPSSRE FSALGSSHNL 60 HMGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI 120 IGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNDF LTGAQSYELV 180 RLINTQFVIY HTLKFIVIIK CFPIARTHDI SRLNSQLSFT HQETLSQISE ETENVDNGLN 240 SENEKRKSAH TYSNVSYGVG PWEDANTIMF SMGPTSKRAK SMSGDIVNLN SMETQFQFGM 300 PQTMLDMSSM DKLLNIPQDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQDLVPN 360 MDKQTSYADM LDLAVQHIKG LQNQVQRLHK ELDNCTCGCR KPQDSCRGGK S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MYPSSTSSSS QGSMGPNGGS STGGLIRYGS APSSLLATAA DSVTNPSSRE FSALGSSHNL  60
HMGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI  120
IGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNDF LTGAQSYELV  180
RLINTQFVIY HTLKFIVIIK CFPIARTHDI SRLNSQLSFT HQETLSQISE ETENVDNGLN  240
SENEKRKSAH TYSNVSYGVG PWEDANTIMF SMGPTSKRAK SMSGDIVNLN SMETQFQFGM  300
PQTMLDMSSM DKLLNIPQDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQDLVPN  360
MDKQTSYADM LDLAVQHIKG LQNQVQRLHK ELDNCTCGCR KPQDSCRGGK S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	3e-63	bHLH family protein