PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165026.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 415aa MW: 46782.9 Da PI: 5.4811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	208	259	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_027165026.1 208 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 259 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MTMLFFFQPE MLQGSIPGNF TGLDYTLEHH QQNQHPQLMK PQIGEVSGDD GSNQMVDYML 60 HNTAQQQPMS SGFCGSTSLD KLSFADVMQF ADFGPKLALN QAKTPEEETV LNDSVYFLKF 120 PVLNEKLQDD RDHQALMIPR PINEESNSKV GEEGDQRPDQ DQARGFGNTS VQLQFLGDNR 180 EKSPLTTETK NKKKRSRTIK SSEEVESQRM THIAVERNRR KQMNEHLRVL RSLMPGSYVQ 240 RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLYGDGPRP IGDSSSSIPI QQPQPPFFPG 300 MPLSSDQMKL VELETGLHEE TAESKSCLAD VEVKLLGFDA LIKILSRRRP GQLIKTIAAL 360 EDLQLNILHT NITTIEQTVL YSFNVKVASE ARFTAEDIAN SIQQIFSFIH ANSSI

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MTMLFFFQPE MLQGSIPGNF TGLDYTLEHH QQNQHPQLMK PQIGEVSGDD GSNQMVDYML  60
HNTAQQQPMS SGFCGSTSLD KLSFADVMQF ADFGPKLALN QAKTPEEETV LNDSVYFLKF  120
PVLNEKLQDD RDHQALMIPR PINEESNSKV GEEGDQRPDQ DQARGFGNTS VQLQFLGDNR  180
EKSPLTTETK NKKKRSRTIK SSEEVESQRM THIAVERNRR KQMNEHLRVL RSLMPGSYVQ  240
RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLYGDGPRP IGDSSSSIPI QQPQPPFFPG  300
MPLSSDQMKL VELETGLHEE TAESKSCLAD VEVKLLGFDA LIKILSRRRP GQLIKTIAAL  360
EDLQLNILHT NITTIEQTVL YSFNVKVASE ARFTAEDIAN SIQQIFSFIH ANSSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	220	RMTHIAVERNRR
2	269	273	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-133	bHLH family protein