PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027165019.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 580aa MW: 61895.9 Da PI: 6.1633

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027165019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	391	438	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027165019.1 391 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 438 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MERENLQMPY GSGIGGFHSN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVSS 60 PAASNAAGGG GGGGGGGGVP GSSNGGENVV LRELIGRLGS ICNSGEISPQ SYMGGGNNST 120 NTSCYSTPLN SPPKLNLSMM DHQIRGNLPI PGHHLPSHSS FTPFPTDPGF AERAARFSCF 180 ANKSLGGLNS QIGPLHDSEL QNRLVQKLDS GKLSRVSSNQ SLKVNSGSQL DVQDSKDGSL 240 QDGISASDRK FSKLSGSSTP ENTEFGDSRE NSSVSEQITT GETGNNGQND ANSRKRKSIA 300 RGKAKEPPSS SNSAKDANGA SDSNESNAKR SKSGEENADE KDATQAMADT NGTDKAAGDG 360 NQKQNKENSK PPEAPKDYIH VRARRGQATD AHSLAERVRR EKISERMKLL QDLVPGCNKV 420 TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT INPRMEFNAE ALVSKDVLHS RGSLPHNMYS 480 SEASAAGFPY PMQSQNGTNL PSAAIPNGQD VPFSMNHLSA AISRNQGIHL PPLDNFGEAA 540 SQIPSFWEDD LHTVVQMGFG QNQTQNFHGI MPTAQMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MERENLQMPY GSGIGGFHSN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVSS  60
PAASNAAGGG GGGGGGGGVP GSSNGGENVV LRELIGRLGS ICNSGEISPQ SYMGGGNNST  120
NTSCYSTPLN SPPKLNLSMM DHQIRGNLPI PGHHLPSHSS FTPFPTDPGF AERAARFSCF  180
ANKSLGGLNS QIGPLHDSEL QNRLVQKLDS GKLSRVSSNQ SLKVNSGSQL DVQDSKDGSL  240
QDGISASDRK FSKLSGSSTP ENTEFGDSRE NSSVSEQITT GETGNNGQND ANSRKRKSIA  300
RGKAKEPPSS SNSAKDANGA SDSNESNAKR SKSGEENADE KDATQAMADT NGTDKAAGDG  360
NQKQNKENSK PPEAPKDYIH VRARRGQATD AHSLAERVRR EKISERMKLL QDLVPGCNKV  420
TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT INPRMEFNAE ALVSKDVLHS RGSLPHNMYS  480
SEASAAGFPY PMQSQNGTNL PSAAIPNGQD VPFSMNHLSA AISRNQGIHL PPLDNFGEAA  540
SQIPSFWEDD LHTVVQMGFG QNQTQNFHGI MPTAQMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	298	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	1e-77	bHLH family protein