PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164827.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 352aa MW: 39228.1 Da PI: 4.6348

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	85.9	6.8e-27	134	288	4	152
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPilkf 93 lL ++A +s++++ +a + L + a +g+p+qR+a +f+ AL++r++r+v +++++ + ++++++++e++++l+ + P+ ++ XP_027164827.1 134 LLQAAAVNFSNEKFDCACNSLGICVQSAFLTGNPLQRVAYFFATALQERITREVGTMVHSEaLAGNQRKQTVDEAFTSLQPavieCQYELPFCQI 228 455667779999999***********************************77666665514445555556666666554555655567* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspes 152 s+++a qaI++ v++++rvH +D +i+ G Wp ++qaLa+R + l+iT+vg++++ XP_027164827.1 229 SQFAAIQAIMDNVASAKRVHLVDPGIKTGSYWPVMMQALADRYdCPLELLKITAVGPSKQ 288 **************************************9445569*****9554 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MDGRIEQRLR QEDLETMASQ QAETKNKATI PLSSFYVLKE YESKMKQIVS DCVCADSGLP 60 PKKQEDFELE LDFKPQLLSR LAFPADAIIK MARAKLLQFT SISSGGASVL ISVDVYADLG 120 LSYDQHKDFE PALLLQAAAV NFSNEKFDCA CNSLGICVQS AFLTGNPLQR VAYFFATALQ 180 ERITREVGTM VHSEALAGNQ RKQTVDEAFT SLQPAVIECQ YELPFCQISQ FAAIQAIMDN 240 VASAKRVHLV DPGIKTGSYW PVMMQALADR YDCPLELLKI TAVGPSKQII EEVVVSGIRY 300 LEADFFELEA DEVLAVHSRF HIVNLLAWPD NLLSLVETFN KLNPRVMVIT EV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MDGRIEQRLR QEDLETMASQ QAETKNKATI PLSSFYVLKE YESKMKQIVS DCVCADSGLP  60
PKKQEDFELE LDFKPQLLSR LAFPADAIIK MARAKLLQFT SISSGGASVL ISVDVYADLG  120
LSYDQHKDFE PALLLQAAAV NFSNEKFDCA CNSLGICVQS AFLTGNPLQR VAYFFATALQ  180
ERITREVGTM VHSEALAGNQ RKQTVDEAFT SLQPAVIECQ YELPFCQISQ FAAIQAIMDN  240
VASAKRVHLV DPGIKTGSYW PVMMQALADR YDCPLELLKI TAVGPSKQII EEVVVSGIRY  300
LEADFFELEA DEVLAVHSRF HIVNLLAWPD NLLSLVETFN KLNPRVMVIT EV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-15	GRAS family protein