PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027164750.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 584aa    MW: 65770.1 Da    PI: 6.756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027164750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.12.7e-752115794374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl......fsevsPil 91 
                      Ll++Ae v+++++  a++lL+  +  +s++g+p+qR+  yf+ AL++++ +++  +++   +  ++ ++++++++    l       ++  P+ 
  XP_027164750.1 211 RLLAAAEKVAKQQFVYARKLLSLCESSVSQSGNPIQRVGYYFADALQEKIDKEWGLVSSEEmERIRKGPTDVEQTMIR--LrpemtrCQQEIPFC 303
                     599*************************************************99887765423333333333332222..223456699999*** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++ta q Il+ v++++rvH iDf+i +G +W  ++qa++ R e p  +l+iT+vg+    sk+++e tg+ L++fAe++ +pf+f++ ++++
  XP_027164750.1 304 LYTQFTAIQSILDCVASAKRVHLIDFGIDNGSHWTLIMQAFSVRFECPLeHLKITAVGA----SKQMMEDTGKWLSSFAETISLPFSFSI-IVSE 393
                     ********************************************965544*********....9*************************9.7999 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++dl+  ++ ++ ++++aV l l+l +ll    + +++ d+++kl+++l+P+++vv e ea+ ns++Fl+rf e+++++sa+fd++++ + +   
  XP_027164750.1 394 MKDLKEGRFGLEADDTVAVYLGLRLWTLL----PWPNQLDKFIKLIRNLNPRLIVVNEMEASINSPDFLKRFNESIHVFSAIFDCINSCMYHRVM 484
                     ****************************9....77777788*********************************************99999999* PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+  E++++   i+n+v +eg e ++r e+ + Wr+ ++++G  +  +s    +q  l lr  +     +ve + ++l+lgWk+ ++ svSaW+
  XP_027164750.1 485 FRKLNEEVIFPGMIRNIVIAEGIEWIQRYEKISVWRALFGKFGIVETDMSRPPPDQEILFLRSSDrLTSCTVELDGKCLLLGWKGSAIQSVSAWK 579
                     *****************************************************************8889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MSDLENMCAP RGDDCLCLDR SLLQCLVRYA MTIPIGKKTS NALAVSEINP SVKKTFLQII  60
LLLDFPLELR NRKTADSSLK PPFRVSADWK DMDSGPANIS NSQTISYVAD TEREIPQIPL  120
NPLELLNQYA PKVKRLRVED SSEKKSDPPP NPASSGHGQA IPAASIIKMA KARLLQLNSQ  180
KADIVSYAST SFGAQCGLPS AAAEDFELAL RLLAAAEKVA KQQFVYARKL LSLCESSVSQ  240
SGNPIQRVGY YFADALQEKI DKEWGLVSSE EMERIRKGPT DVEQTMIRLR PEMTRCQQEI  300
PFCLYTQFTA IQSILDCVAS AKRVHLIDFG IDNGSHWTLI MQAFSVRFEC PLEHLKITAV  360
GASKQMMEDT GKWLSSFAET ISLPFSFSII VSEMKDLKEG RFGLEADDTV AVYLGLRLWT  420
LLPWPNQLDK FIKLIRNLNP RLIVVNEMEA SINSPDFLKR FNESIHVFSA IFDCINSCMY  480
HRVMFRKLNE EVIFPGMIRN IVIAEGIEWI QRYEKISVWR ALFGKFGIVE TDMSRPPPDQ  540
EILFLRSSDR LTSCTVELDG KCLLLGWKGS AIQSVSAWKI KQDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-42GRAS family protein