PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027164748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 595aa MW: 67067.8 Da PI: 6.4627 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 292 | 1.6e-89 | 222 | 593 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevs 88 lv+ Ll+ Ae v ++++e+a +lL + +l+s++g++++Rl+ yf AL++r+ r++ ++ p+ +++s + l ++ ++ XP_027164748.1 222 LVQYLLASAELVGKKQFERAGKLLLECDKLSSNQGNTIERLVYYFSGALHERIDRETGTVT----PKGLGKMQSLDMLDTMSGltpdiiaMQKSV 312 6899***************************************************443333....33333333333333331112233569**** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 P+ ++s+++ q Il+ v+ ++++Hi+D++i G+Q+ L+qaLa+R+ ++ l++T++g +sk ++eetg+rLa+fA++l+++f+ n+++ XP_027164748.1 313 PFSQVSQFAGTQGILDHVADATKIHIVDLEIRTGMQYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRRLASFARALNLKFSLNIVM 404 ************************************************455569********...689*************************** PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + ++ dl+ + +++ +Ea+aV + + l+ + +++ les ++++vk ++P+v++v+e e +hns+ F++rf+eal +y a++dsle l + XP_027164748.1 405 VADIMDLNENLFEIYADEAVAVWVEYYLMFMIRRQDILES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFHYGAFYDSLEDCLKH 495 *******************************977777777....*************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 +s++r++vE ++++++i+n+va+eg+er+ rh ++ W++ + ++G+ v+ls + + qa+lll++++ + ++ + + l++gWk+ p+ s+S XP_027164748.1 496 DSKNRMFVESVYFSQAIRNIVATEGEERTIRHVAVNVWKAFFARFGMVLVELSMSSMYQANLLLKNFDcGSSCTLAMDGKGLIIGWKGTPIHSLS 590 ********************************************************************9999*********************** PP GRAS 372 aWr 374 aW+ XP_027164748.1 591 AWK 593 **8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 595 aa Download sequence |
MEMFHFDHFD FLGVSGKYGS TKGFQFEDHA KEEKRNHLIT NNVDEWEASR GIGSFYPGAP 60 GSNQVHCSTA DGVIFSKLHQ EQQLKQLSGF ACFNDLYFDM EIPPFQSCEE AIKKLVDDVA 120 FEGSEPNDAK KERPYAGSLQ ILKNYRKRFR KLNVEKTDFP SYLGCTFITS QKLSADAILK 180 LAAQNFIRSS SEGTSSEFFV LNHPYASSFV GLGEEDIKGV QLVQYLLASA ELVGKKQFER 240 AGKLLLECDK LSSNQGNTIE RLVYYFSGAL HERIDRETGT VTPKGLGKMQ SLDMLDTMSG 300 LTPDIIAMQK SVPFSQVSQF AGTQGILDHV ADATKIHIVD LEIRTGMQYT ILMQALATRS 360 QNPLEYLKVT AIGTKSKAKI EETGRRLASF ARALNLKFSL NIVMVADIMD LNENLFEIYA 420 DEAVAVWVEY YLMFMIRRQD ILESLMNVVK AINPRVMIVT EVEGNHNSPV FVTRFIEALF 480 HYGAFYDSLE DCLKHDSKNR MFVESVYFSQ AIRNIVATEG EERTIRHVAV NVWKAFFARF 540 GMVLVELSMS SMYQANLLLK NFDCGSSCTL AMDGKGLIIG WKGTPIHSLS AWKFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 4e-58 | GRAS family protein |