PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164714.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 1004aa MW: 111559 Da PI: 7.1928

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_027164714.1 153 VCQVEDCRADLSNAKDYHRRHKVCDVHSKATRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 230 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence
MEAEIGGKAY HYYGPVVSDL KAVGKRSVEW DLNDWKWDGD LFTAAPLNSL PSDCRSRQFF 60 PIGSEIPTNS LVSNSVSSGS DEMFVGSDKG KRELEKRRRG VDGEDEELTD EAGSLHLKLG 120 GHVYPITEGD ADKWEGKSGK KTKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDVHS 180 KATRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTHP ESVESGTPAT 240 DERGSNYLLI SLLRILSNIH SNNSSDQTKD QDLLSHLLRS LAGLAGIVNE KNLTGLLPGS 300 QDLQNAGTSD GNPAKDTSRN MLQYSTMPAS ESAQKRILGD DDNGIVRISS PAQSTLLLPP 360 KEGILTKASS LGTTVGKTRM NNIDLNNAYD DSQDCIENLQ SSDCPTHIGK ASSGCPLWVY 420 QAPYKSSPPQ PSGNSGSTST QSPSSSSGEA QSRTDRIVFK LFGKDPSDFP LALRKQILDW 480 LSHSPSDIES YIRPGCVILT IYIRMDKSTW EELCYDLTSS LRRLLDASTD SFWKSGWIYA 540 RVRHRVAFVY DGCIVLDTPL PHKSQKSCRI LNIKPIAVCA SGEVKFSVRG INLSQPTTRL 600 LCALEGKYLA QERCADVIGG ADLYIEHAEI QTLNFTCTVP DVTGRGFIEV EDHGLSSSFF 660 PFIVAENDVC SEISTLESVI EAAEISNGLH GDNQNLEARN QALDFIHEIG WLLHRSQLKF 720 RLGQQDPNLD TFPFQRFRWL IEFSVEHDWC AVVKMLLNVL FNKLMGEEKR SSIEDALLDI 780 GLLHRAVRRN CRSMVEVLLR YHPDADLNKL SAIRYVFRPD VKGPGGLTPL HIAAGRDGAE 840 HVLDALTDDP GLVGVEAWRS ARDSTGLTPN DYACLRGHYS YIHLVQKKIN KKWGSQHVVL 900 EIPDGHVQSS MNQKTADENK SRKVSSLSTE MSVVKPSHVH CRQCEQKLAY GRNRTSLAIY 960 RPAMLSMVAI AAVCVCVALL FKSSPEVDYV YGPFRWEYLE YGSS

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence

MEAEIGGKAY HYYGPVVSDL KAVGKRSVEW DLNDWKWDGD LFTAAPLNSL PSDCRSRQFF  60
PIGSEIPTNS LVSNSVSSGS DEMFVGSDKG KRELEKRRRG VDGEDEELTD EAGSLHLKLG  120
GHVYPITEGD ADKWEGKSGK KTKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDVHS  180
KATRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTHP ESVESGTPAT  240
DERGSNYLLI SLLRILSNIH SNNSSDQTKD QDLLSHLLRS LAGLAGIVNE KNLTGLLPGS  300
QDLQNAGTSD GNPAKDTSRN MLQYSTMPAS ESAQKRILGD DDNGIVRISS PAQSTLLLPP  360
KEGILTKASS LGTTVGKTRM NNIDLNNAYD DSQDCIENLQ SSDCPTHIGK ASSGCPLWVY  420
QAPYKSSPPQ PSGNSGSTST QSPSSSSGEA QSRTDRIVFK LFGKDPSDFP LALRKQILDW  480
LSHSPSDIES YIRPGCVILT IYIRMDKSTW EELCYDLTSS LRRLLDASTD SFWKSGWIYA  540
RVRHRVAFVY DGCIVLDTPL PHKSQKSCRI LNIKPIAVCA SGEVKFSVRG INLSQPTTRL  600
LCALEGKYLA QERCADVIGG ADLYIEHAEI QTLNFTCTVP DVTGRGFIEV EDHGLSSSFF  660
PFIVAENDVC SEISTLESVI EAAEISNGLH GDNQNLEARN QALDFIHEIG WLLHRSQLKF  720
RLGQQDPNLD TFPFQRFRWL IEFSVEHDWC AVVKMLLNVL FNKLMGEEKR SSIEDALLDI  780
GLLHRAVRRN CRSMVEVLLR YHPDADLNKL SAIRYVFRPD VKGPGGLTPL HIAAGRDGAE  840
HVLDALTDDP GLVGVEAWRS ARDSTGLTPN DYACLRGHYS YIHLVQKKIN KKWGSQHVVL  900
EIPDGHVQSS MNQKTADENK SRKVSSLSTE MSVVKPSHVH CRQCEQKLAY GRNRTSLAIY  960
RPAMLSMVAI AAVCVCVALL FKSSPEVDYV YGPFRWEYLE YGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein