PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027164233.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 1030aa MW: 114318 Da PI: 7.2296

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027164233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.3e-41	183	260	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvCe+hska+ +lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_027164233.1 183 VCQVEDCKADLTKAKDYHRRHKVCEMHSKASRALVANVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQP 260 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence
MEARTRLGLG GQAELLTRAV GSGDSKAAAN KRSNLEWDLN DWKWDEDLFL ATPLINSSTT 60 SPLINYHHQQ SRHFFPLETG GVNNHHHHHR DVAARSSSST SSSCSDEFKN LGGGVGAGSR 120 RELDKRRRVL VVRDDNLEDE AAPASLALKL NSRGGRDCYT PECERYASGK KTKAAATAAS 180 RAVCQVEDCK ADLTKAKDYH RRHKVCEMHS KASRALVANV MQRFCQQCSR FHALQEFDEG 240 KRSCRRRLAG HNKRRRKTQP DPMANETSSN DSQASGYLLM CIVKILSHIH SGKTNQTDDQ 300 ELLSHLLRSL GGHGALHGDK DISRLLQLPQ NFPNNGAEMV SALLANGTQG LPISKHPEMS 360 QNILHNRDVQ VEDLPTSSSQ PTQSSVAYVQ VNENHVERNK LNNFDLNDAY IDLEAAIEDL 420 ERSPVPVDVA TSNLEYHSWM RQNSHQSSPP QTSGNSDSAS APSPSSSSAD ARSRTDRIVF 480 KLFGKQPSDF PGSLRGQILD WLSHSPTDIE SYIRPGCIVL TIYLCTSVLA WEELSHNLGS 540 SLSRLLNVSD DGSFWRTGWI YARVQNRIVF ICSGRIVVET SLPSQSSYYG AIVSVKPIAV 600 PPSERAEFTI TGVNLSRPST RILGALRGSY VLFEDNGQSL EHIDSFKEHD ELQCLNFACS 660 IPVVTGRGFL ELEDLGLSSS FFPFIVAEKD VCSEIRMLES EMELPETDCL GVKTESRKLA 720 MDFIHEFGWL LHRSQLKSKL GHSDQNSHPF AFTRFNWIIQ FSADHGWCAV VKKLLDLLLD 780 GNIGAREQPL LRSAMFEMGL LHRAVRRNSR PLVELLLRYV PERIANELSL EYASLVGSEG 840 SPLFRPDAVG PAGLTPLHVA AGTDGSEDVL SALTNDPGQV AVEAWKNARD NNGFTPEDYA 900 RLRGHYSYVH LVQRKIHKKI LVGHVAVVDI PNAVSSGRTK QNEEEEARKT SFEIARSEIG 960 SAELHRCRLC DRKFVATGGG NGSPLYRPGM LSMVAIAAVC VCVALLFKSS PEVLFVFRPF 1020 RWEMLDYGSW

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence

MEARTRLGLG GQAELLTRAV GSGDSKAAAN KRSNLEWDLN DWKWDEDLFL ATPLINSSTT  60
SPLINYHHQQ SRHFFPLETG GVNNHHHHHR DVAARSSSST SSSCSDEFKN LGGGVGAGSR  120
RELDKRRRVL VVRDDNLEDE AAPASLALKL NSRGGRDCYT PECERYASGK KTKAAATAAS  180
RAVCQVEDCK ADLTKAKDYH RRHKVCEMHS KASRALVANV MQRFCQQCSR FHALQEFDEG  240
KRSCRRRLAG HNKRRRKTQP DPMANETSSN DSQASGYLLM CIVKILSHIH SGKTNQTDDQ  300
ELLSHLLRSL GGHGALHGDK DISRLLQLPQ NFPNNGAEMV SALLANGTQG LPISKHPEMS  360
QNILHNRDVQ VEDLPTSSSQ PTQSSVAYVQ VNENHVERNK LNNFDLNDAY IDLEAAIEDL  420
ERSPVPVDVA TSNLEYHSWM RQNSHQSSPP QTSGNSDSAS APSPSSSSAD ARSRTDRIVF  480
KLFGKQPSDF PGSLRGQILD WLSHSPTDIE SYIRPGCIVL TIYLCTSVLA WEELSHNLGS  540
SLSRLLNVSD DGSFWRTGWI YARVQNRIVF ICSGRIVVET SLPSQSSYYG AIVSVKPIAV  600
PPSERAEFTI TGVNLSRPST RILGALRGSY VLFEDNGQSL EHIDSFKEHD ELQCLNFACS  660
IPVVTGRGFL ELEDLGLSSS FFPFIVAEKD VCSEIRMLES EMELPETDCL GVKTESRKLA  720
MDFIHEFGWL LHRSQLKSKL GHSDQNSHPF AFTRFNWIIQ FSADHGWCAV VKKLLDLLLD  780
GNIGAREQPL LRSAMFEMGL LHRAVRRNSR PLVELLLRYV PERIANELSL EYASLVGSEG  840
SPLFRPDAVG PAGLTPLHVA AGTDGSEDVL SALTNDPGQV AVEAWKNARD NNGFTPEDYA  900
RLRGHYSYVH LVQRKIHKKI LVGHVAVVDI PNAVSSGRTK QNEEEEARKT SFEIARSEIG  960
SAELHRCRLC DRKFVATGGG NGSPLYRPGM LSMVAIAAVC VCVALLFKSS PEVLFVFRPF  1020
RWEMLDYGSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	129	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein