PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163823.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 523aa MW: 56641.1 Da PI: 9.4458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	72	92	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_027163823.1 72 CEICNKGFQRDQNLQLHRRGH 92 *******************88 PP
2	zf-C2H2	11.6	0.00087	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_027163823.1 146 WKCEKCSKKYAVQSDWKAHGKIC 168 58*****************8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNAAK RKRNLPGTPA DPDAEVVALS 60 PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKKV YICPEKTCVH 120 HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHGKICGT REYKCDCGTL 180 FSRKDSFITH RAFCDALAEE SARFAPIPSA NLNFRNELFN GGLSSLQPAG NPQFSSSIAG 240 LDPATGQLNL NGQKPRLPLW LDNANTQLNN PIGNHPGNSN AFLASSSTSL PELVQMTPTN 300 MLGLSSQNQW FNSGGNASSS GLPRVLKEEE ENRGNLSDHI SSLYYNNGQN SSQHETAPAH 360 MSATALLQKA AQMGSTRSNS AIFGTGFGLM SSSLSSLSNF NSLNQSRNEL QNFGQAENLN 420 GLMTSTSQST ITTNQGDGLL LGNMSSSNNL VGNLRHPSAP PTIMPGSTDR GGSQSKSSGN 480 EAEGGLTRDF LGVGGNESRP FLQQNELVKF ASSMSSAMDF GNQ

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNAAK RKRNLPGTPA DPDAEVVALS  60
PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKKV YICPEKTCVH  120
HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHGKICGT REYKCDCGTL  180
FSRKDSFITH RAFCDALAEE SARFAPIPSA NLNFRNELFN GGLSSLQPAG NPQFSSSIAG  240
LDPATGQLNL NGQKPRLPLW LDNANTQLNN PIGNHPGNSN AFLASSSTSL PELVQMTPTN  300
MLGLSSQNQW FNSGGNASSS GLPRVLKEEE ENRGNLSDHI SSLYYNNGQN SSQHETAPAH  360
MSATALLQKA AQMGSTRSNS AIFGTGFGLM SSSLSSLSNF NSLNQSRNEL QNFGQAENLN  420
GLMTSTSQST ITTNQGDGLL LGNMSSSNNL VGNLRHPSAP PTIMPGSTDR GGSQSKSSGN  480
EAEGGLTRDF LGVGGNESRP FLQQNELVKF ASSMSSAMDF GNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-107	C2H2 family protein