PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163821.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 392aa MW: 43190.1 Da PI: 8.2564

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163821.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	52	112	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_027163821.1 52 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 112 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.9e-36	51	114	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_027163821.1 51 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 114 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSERSPE PKPRWNPRPE 60 QIRILEAIFN SGMVNPPRDE IRKIRAQLQE YGQVGDANVF YWFQNRKSRS KHKQRHFQST 120 TKSQPPQIPH ITSTPPATKT TSLSSSSSSS ERSSQNSADK TLSLGPKNLL DTSSSPTASV 180 NQHFFQSHSA EFLPVPFFFP VQQPPSAAES TPPAAFSQGF CFSDAPSLSH LADNTIQNSS 240 SLLLSDLLLM NHVPTKKVQD EKIKLQQQLN YTALTTPPIT TSQSIFSPTS VAAVSSIDHV 300 HGVGETGSAD PTKSTVFIND VAFEVTSAFF NVREAFGDDA VLVHSSGQPV MTNEWGVTLQ 360 PLQHGAFYYL IRTSTSSSHD TTIDLIYPTR GC

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSERSPE PKPRWNPRPE  60
QIRILEAIFN SGMVNPPRDE IRKIRAQLQE YGQVGDANVF YWFQNRKSRS KHKQRHFQST  120
TKSQPPQIPH ITSTPPATKT TSLSSSSSSS ERSSQNSADK TLSLGPKNLL DTSSSPTASV  180
NQHFFQSHSA EFLPVPFFFP VQQPPSAAES TPPAAFSQGF CFSDAPSLSH LADNTIQNSS  240
SLLLSDLLLM NHVPTKKVQD EKIKLQQQLN YTALTTPPIT TSQSIFSPTS VAAVSSIDHV  300
HGVGETGSAD PTKSTVFIND VAFEVTSAFF NVREAFGDDA VLVHSSGQPV MTNEWGVTLQ  360
PLQHGAFYYL IRTSTSSSHD TTIDLIYPTR GC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-59	WOX family protein