PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163666.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 320aa MW: 36356.8 Da PI: 9.4582

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.4	5.6e-18	112	201	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps+v+ s +l++p+kf + h + ++ t++l de+g++++ ++ +++++ l++GW++F +++L gD+++F+l+g+ + +v+ XP_027163666.1 112 FLKCMLPSNVTYSFWLIIPRKFGSLHL-P-SQDSTVILVDEWGKEYKTTYLIDRNG----LSAGWRGFSMSHRLLKGDILIFRLIGHCKL--KVH 198 89*******************8884.3.35569***********888888....***********************96666..787 PP EE- CS B3 96 vfr 98 ++r XP_027163666.1 199 IVR 201 776 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MEAEKLIGEQ QNQKEHRTQN CIENEQTSVK RRKRKKKDEM PMEKKKKVIA GNPKAPKSKS 60 KKVDSDTGKN SRCIKRKRTG MNEIYDDVES KFTVMERAAK VLASMEDGAP YFLKCMLPSN 120 VTYSFWLIIP RKFGSLHLPS QDSTVILVDE WGKEYKTTYL IDRNGLSAGW RGFSMSHRLL 180 KGDILIFRLI GHCKLKVHIV RVHGLDVVNA AACLMNLDAF GTMDSDPVKQ DYRKRKRTKK 240 YADCSVFDAP RIPDKVQEKG KMVLKSDLVP VEDQSENTSD GFGSEVLEGS GMTDHLLSGD 300 HHHTEASFLH EHPCEGVVCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	36	KRRKRKK
2	30	47	KRRKRKKKDEMPMEKKKK
3	30	59	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK
4	31	37	KRRKRKK
5	31	48	KRRKRKKKDEMPMEKKKK
6	31	60	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK
7	31	38	RRKRKKKD
8	32	49	KRRKRKKKDEMPMEKKKK
9	32	61	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK
10	32	36	RKRKK
11	32	38	RKRKKKD
12	33	50	KRRKRKKKDEMPMEKKKK
13	33	62	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK
14	34	63	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK
15	233	262	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK
16	233	240	RKRKRTKK
17	234	263	KRRKRKKKDEMPMEKKKKVIAGNPKAPKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-30	B3 family protein