PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027163454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 725aa MW: 81695.4 Da PI: 6.7423 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.4 | 3e-121 | 352 | 722 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+a++++d + a+++L+++++++sp+gd mqRla+yf+ +L+ar+a+s++++ykal + +ts +++l+a++l+ ++P+ k+s+ XP_027163454.1 352 LRTLLTLCAQAIAADDRRTANEFLKQIRQHCSPTGDGMQRLAKYFADGLEARMAGSGTQIYKALITMPTS---AADVLKAYQLYLAACPFRKISN 443 5789************************************************************999999...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++I a+e+ +++HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef + +a+++e+ XP_027163454.1 444 FFSNKTIWHAAEKGSTLHIIDFGILYGFQWPCLIQRLSSRPGGPPKLRITGIDLPHPGfrPAERVEETGRRLANYAETFKVPFEFIA-IAQKWET 537 ********************************************************9999***************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E+laVn+ +++ +llde+v ++s+r+ vL+l+++++P+v+v+ + +n++ F++rf eal +ys++fd+lea++pre +er+ XP_027163454.1 538 VRIEDLKIREDEVLAVNCLYRMRNLLDETVVVNSPRNIVLNLIRKMKPDVFVLGIVNGAYNAPFFVTRFREALFHYSSFFDMLEANIPREIHERM 632 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ ++gre++nv+ace aer+er et+++W+ r +aGF+++pl+e+++ ak + +++d + ++e+s++l++gWk+r L+++S+Wr XP_027163454.1 633 LLEKTIFGREAMNVIACEAAERIERPETYKQWQVRNLRAGFRQLPLNEDIMRMAKERAKSYDKD-FVIDEDSQWLLQGWKGRILYALSSWR 722 **************************************************************77.*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence |
MVMDGNSRVG YGTTSGIELN DEGVSVVPNP NLIGSLRLDG NVVERNYASR LSVQSHLYPN 60 EFVPLSSGDS NEDYDFSDAV LKYINDMLME EEMEDKGCMF QESAALQAAE KSFYDVLGEK 120 YPPPPDHQVP SSNLRVSSRE ESYLGGYGGL IWCPSWNNGT SGSDSTYVQH FSPYSSSNSS 180 GTVADGHIDS PDSILRISDI FSDSQSAMQF KKGVEEASKF LPNGNALLVD SQENGLLDKD 240 QKKWPMTVKV ERSENGYSPD ESRGKKNPLH EDLQQQGGRS NKQSAVFTES TVRSDLFDKV 300 LLCSEGRNES DLRKALQDIA VKNVPQNNKL KGSSGGKSRS KKQGAKRNMV DLRTLLTLCA 360 QAIAADDRRT ANEFLKQIRQ HCSPTGDGMQ RLAKYFADGL EARMAGSGTQ IYKALITMPT 420 SAADVLKAYQ LYLAACPFRK ISNFFSNKTI WHAAEKGSTL HIIDFGILYG FQWPCLIQRL 480 SSRPGGPPKL RITGIDLPHP GFRPAERVEE TGRRLANYAE TFKVPFEFIA IAQKWETVRI 540 EDLKIREDEV LAVNCLYRMR NLLDETVVVN SPRNIVLNLI RKMKPDVFVL GIVNGAYNAP 600 FFVTRFREAL FHYSSFFDML EANIPREIHE RMLLEKTIFG REAMNVIACE AAERIERPET 660 YKQWQVRNLR AGFRQLPLNE DIMRMAKERA KSYDKDFVID EDSQWLLQGW KGRILYALSS 720 WRPAD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | GRAS family protein |