PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163336.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 280aa MW: 31574.7 Da PI: 9.0789

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.9	7.1e-13	216	240	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C++ ++C+FaHg XP_027163336.1 216 KTELCNKWQETGSCPFAGNCRFAHG 240 9***********************8 PP
2	zf-CCCH	21.5	4.2e-07	253	278	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_027163336.1 253 YKTEVCRMVLAGDICPYGHRCHFRHS 278 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
TGTPHLSLNF RALPPSYDTM TDEVVTPDRC HSDSSLILEY QQLYNRYAFC LANLRESIKE 60 VQALGQDNES LRLANADLVH RLSLLSRATI HNCLLSDFNR LRISGNATPS PRLYSREASP 120 APAPDVIQQK RFQRRHLAER VSLPKSISIR SAGYLKFKPE SAGKYEAPTT QASSPNRVNS 180 PPLPDSEKAR QRVYVAGGGR EEEASQFEVY NQGMSKTELC NKWQETGSCP FAGNCRFAHG 240 IMELRPVIRH PRYKTEVCRM VLAGDICPYG HRCHFRHSLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-63	C3H family protein