PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163329.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 126aa MW: 14680.2 Da PI: 9.6735

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.2	5.7e-13	6	34	28	56
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++++LA++l+L rqV vWFqNrRa++k XP_027163329.1 6 KQKQDLARELNLRPRQVEVWFQNRRARMK 34 799************************99 PP
2	HD-ZIP_I/II	91.8	7.5e-30	5	69	26	91
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +++K++lareL+l+prqv+vWFqnrRAR+k+kq+E+d+e+Lk++y++l++en+rLeke +eL+ +l XP_027163329.1 5 QKQKQDLARELNLRPRQVEVWFQNRRARMKLKQTEVDCEFLKKCYETLTDENKRLEKELQELK-AL 69 589***********************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence
MLILQKQKQD LARELNLRPR QVEVWFQNRR ARMKLKQTEV DCEFLKKCYE TLTDENKRLE 60 KELQELKALK LAQPLYMMQL PMATLTMCPS CERVGRVGEN SSSKSPFSMA PKPHFFNSLT 120 NPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	37	RRARMKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-47	HD-ZIP family protein