PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162767.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26826.9 Da PI: 7.506

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	33	84	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F+++ ++ + +LAk lgL+ rqV++WFqN+Ra++k XP_027162767.1 33 KRFSDEQVKSLESMFNREAKLEPMNKMQLAKDLGLQPRQVSIWFQNKRARWK 84 47*************************************************9 PP
2	HD-ZIP_I/II	116.4	1.6e-37	32	122	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eqvk+LE++F++e kLep +K++la++Lglqprqv +WFqn+RAR+k+k+lE++y++Lk+++dal ++ e+L+ke+e+L e+l++ XP_027162767.1 32 AKRFSDEQVKSLESMFNREAKLEPMNKMQLAKDLGLQPRQVSIWFQNKRARWKSKKLEQEYRVLKANFDALCHQFEALKKENESLLEQLHT 122 69************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MEQTGYFEQE RWKPSNKHSP FPIPKRKRRN NAKRFSDEQV KSLESMFNRE AKLEPMNKMQ 60 LAKDLGLQPR QVSIWFQNKR ARWKSKKLEQ EYRVLKANFD ALCHQFEALK KENESLLEQL 120 HTLNGLLENS NKKQSSSKDS NENAEHTAPP KRDQHPERRE DDERTTKVNV DGVGVNEHFG 180 KEDQANFDIL TEQGESTSAS RKPWCNLVSD GLLDESCCPS SWWDFSDGLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	9e-39	HD-ZIP family protein