PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162745.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 451aa MW: 48907.4 Da PI: 8.052

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	210	287	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh+++efDe+krsCrrrLa+hnerrrk+++ XP_027162745.1 210 RCQVDGCHVALLNAKDYHRRHKVCEQHSKAPKVVVLGLEQRFCQQCSRFHAVEEFDESKRSCRRRLAGHNERRRKSSQ 287 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MENGWDLFNI TTNNNLIGKT HHHNNSSNSS NNNNNANCTS DSNNARAMWD SGTIATPKID 60 WNTNNLDKSS SFFNLDNTPA PTAATVIASQ QEEKGAVHAL MFDNVSSSPF PSCLYGRGGG 120 GGGSHPQCCY PDPHLMCLKL GKRHYFGDAA APLGDRQGAA AGGFSMTTKR GKPYYDAAAG 180 LLVGPSTMTA AAAAAAAGVT VAVTPAVVPR CQVDGCHVAL LNAKDYHRRH KVCEQHSKAP 240 KVVVLGLEQR FCQQCSRFHA VEEFDESKRS CRRRLAGHNE RRRKSSQDQS APRNQTQVNG 300 KLMTCSGRYP YYPLSSGCAL SLLSSKNDSW ISSADLPARC SAALCELIAE NRAAILARQL 360 IVDKEWHWHN HPTEDLNSAR HNGSNAFANY QQLMATGSHS WDRINEAGEH VTLDLMQAPN 420 SAFSFLSMRG KSKEDEECPG LWGSFGGAHV V

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MENGWDLFNI TTNNNLIGKT HHHNNSSNSS NNNNNANCTS DSNNARAMWD SGTIATPKID  60
WNTNNLDKSS SFFNLDNTPA PTAATVIASQ QEEKGAVHAL MFDNVSSSPF PSCLYGRGGG  120
GGGSHPQCCY PDPHLMCLKL GKRHYFGDAA APLGDRQGAA AGGFSMTTKR GKPYYDAAAG  180
LLVGPSTMTA AAAAAAAGVT VAVTPAVVPR CQVDGCHVAL LNAKDYHRRH KVCEQHSKAP  240
KVVVLGLEQR FCQQCSRFHA VEEFDESKRS CRRRLAGHNE RRRKSSQDQS APRNQTQVNG  300
KLMTCSGRYP YYPLSSGCAL SLLSSKNDSW ISSADLPARC SAALCELIAE NRAAILARQL  360
IVDKEWHWHN HPTEDLNSAR HNGSNAFANY QQLMATGSHS WDRINEAGEH VTLDLMQAPN  420
SAFSFLSMRG KSKEDEECPG LWGSFGGAHV V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	9e-36	SBP family protein