PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027162709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 92298.2 Da PI: 6.1095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_027162709.1 27 KYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85 56789****************************************************97 PP | |||||||
2 | START | 158.7 | 4.6e-50 | 167 | 375 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l XP_027162709.1 167 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELV 260 789*******************************************************.7777777777***********999999999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++ +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ + p+ s++ Rae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+ XP_027162709.1 261 YTQIYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNaaaASQFTRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLY 355 ******************************************9999999********************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + ++k++ a+l++ ++ XP_027162709.1 356 ESSKVVAQKMTIAALRYVRQ 375 ***************98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence |
MAMVAQQHRE SSSGSISKQN SSIDSGKYVR YTAEQVEALE RVYTECPKPS SLRRQQLIRE 60 CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL 120 VCENGYMRQQ LQTASAATTT DASCESVVTT PRHSLRDANN PAGLLSIAEE TLTEFLSKAT 180 GTAVDWVQMP GMKPGPDSVG IFAISHSCSG VAARACGLVS LEPTKIAEIL KDRPSWFRDC 240 RSLEVFTMFP AGNGGTIELV YTQIYAPTTL APARDFWTLR YTTTLENGSL VVCERSLSGT 300 GAGPNAAAAS QFTRAEMLPS GYLIRPCDGG GSIIHIVDHL NLEAWSVPEV LRPLYESSKV 360 VAQKMTIAAL RYVRQIAQET SGEVVYGLGR QPAVLRTFSQ RLSRGFNDAI NGFNDDGWSL 420 LSCDGAEDVI IAVNSTKSLS TSSNSLSVIG GILCAKASML LQNVPPAVLV RFLREHRSEW 480 ADFNIDAYSA ASLKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVI RLEGHSLGQE 540 DAFMSRDIHL LQMCSGVDEN AIGACSELVF APIDEMFPDD APLLPSGFRI IPLESKSGDA 600 HDTLPTNRTL DLTSSLEVGP ASATTAADAS SCYNARSVLT IAFQFPFENN LQENVATMAR 660 QYLRSVISSV QRVAMAISPS GVSPTVGPKL SPGSPEALTL AHWICQSYSY HMGAELLRAD 720 PLNGDTVLKN LWLHQDAILC CSLKSLPVFI FANQAGLDML ETTLVALQDV TLDKIFDDTG 780 RKALFAEFAK IMQQGFAYLP GGICMSTMGR HVSYEQAIAW KVLAADENTV HCLAFTFVNW 840 SFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |