PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162640.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 265aa MW: 30094.8 Da PI: 6.1741

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.8e-12	99	149	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 +r+ah +Er RR+++ + ++ Lr llP ++K s ++ + +Av+YI + XP_027162640.1 99 KRAAHRDVERLRRQEMANLYASLRNLLPLeY---IKGKRSMSDQVHQAVNYITH 149 79*************************77...****************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MDDFTSSLIP LQQDDDSQLF PYDLTVPTIH PCLDDTIHHQ DLGNQAASSL APHQQQHYDQ 60 VTSIDDDDNN NHHPRGRQRK KPSSAIPADN NDPDDSKQKR AAHRDVERLR RQEMANLYAS 120 LRNLLPLEYI KGKRSMSDQV HQAVNYITHK EKNIRELKVK RDKLRNLMGG SSDLNVKSVE 180 ETNSSSTTFT VKQCESGGIE ILMKNDLAGN CFPLSRVLDM LLDEGLNVVN CVCTKVDENF 240 LYTIQTEVQF LKISSFLLAF CKVLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	111	KRAAHRDVERLRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-36	bHLH family protein