PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027162588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 38741.4 Da PI: 8.0904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l d+v+ +G g W++ a++ g++R++k+c++rw++yl XP_027162588.1 14 RGAWTPLEDKMLRDYVQSHGAGKWTSLAKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027162588.1 67 RGNITDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence |
MGRRPCCARE GLNRGAWTPL EDKMLRDYVQ SHGAGKWTSL AKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIVKKIQIQD 120 GQHLASSSST KRKPSSTRSR SAVLQNLTSA DKPPNSEKLG SFCTPVIRTK ARRCTKVFIN 180 AHLQASAGAE QGGIIMAVKA QAPPPSSDAK NNFNKTPTGH NNTVGPEPPS GGVKESLPIF 240 PGEEGYLSGF MMDFEIEEKF LLDFLNTDFG GFEHEFIERV AEGTNGETND EVGTAGVAQG 300 TNIETNDEAE ANHFSPNSCP RWLSHDDRNH ADLGSITTLL DPALVWHHDN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 5e-58 | MYB family protein |