PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162481.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 304aa    MW: 33231 Da    PI: 10.0357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
   XP_027162481.1  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEysgvlCLRSNVDLKDKWRN 55
                     79****************************99999**66**********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEYSGV LCLRSNVDLK DKWRNMSVMA  60
NGWGSRERAR LALKRMNQAA KQDDSPMAIS NLAQSDDDNV DPRPHATSSG SPQIGSSKRS  120
IIRLDNLIME AINNLREPGG SNKTTIAAYI EDEYWAPPNF KRLLSSKLKY LTATGKLIKM  180
KRKYRIAPTS ALSDKRRKPS TPLMEGQLEG RQRVSPIIDQ DGMGALTKSQ IDLELAKMRS  240
MTPEEAAAAA AQAVAEAEAA IAEAEEAARE AEAAEADAEA AQAFAEAAMK TLKGRSTPRM  300
MVRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181198KRKYRIAPTSALSDKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.11e-101MYB_related family protein