PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162444.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 262aa    MW: 29435 Da    PI: 9.8626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.7e-33121551128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+P+d+e++ e+L+++v  ++      ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+          
  XP_027162444.1  12 LPAGVKFDPSDQEIL-EHLEARVLLDSrkihplIDEFIpTIEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKvhtdteadgG 104
                     799***********9.899999887774565443332333665557**********.666777788******************75666554443 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v+  +g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_027162444.1 105 GETRWHKTGKTRPVFI-SGALKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 155
                     3778************.999***********66589**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MRPPPRSSRS GLPAGVKFDP SDQEILEHLE ARVLLDSRKI HPLIDEFIPT IEGENGICYT  60
HPEKLPGVNK DGQIRHFFHR PSKAYTTGTR KRRKVHTDTE ADGGGETRWH KTGKTRPVFI  120
SGALKGYKKI LVLYTNYGRQ RKPEKTNWVM HQYHLGTNEE EKDGELVVSK VFYQTQPRQC  180
GGSSSISELD KRSTSSVSHS HLIKSTSNNF IDYYPHPYNN ISYNLGSQSG DSHSSSQLIP  240
NLVVHGDGSS FIHLPSSVSK GK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-109NAC family protein