PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161780.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 432aa MW: 46931.5 Da PI: 7.4402

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	234	288	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027161780.1 234 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 288 778899***********************************************98 PP
2	HD-ZIP_I/II	127.4	6.2e-41	234	324	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk XP_027161780.1 234 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR-ALK 324 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MELGLSLGGE NPSKPFGFTA KANGSSENQN HPNNTNNKDS SSSAKLGLGF CMALGINNNS 60 NETRESRRNS ESKDNDGMDA DADDVDEDDD RTSSEHTRDD DDRRRGISVD TPLQLNLLPL 120 APVPRRTPIH TQPLRWSSDN GSSGSSGNVG LPVVGRGFDV NRVPAVGGVA EEVSSPNSVA 180 SSFQMDFSIF RGGGNLGNGG NKRDFGAAAG NDVVEAERTS SRASDEDENG LNTRKKLRLS 240 KEQSAYLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK 300 RCCETLTDEN RRLHKELQEL RALKTSNPFY MQLPATTLTM CPSCERVATT STTTAAAAAP 360 VPSTTTTTTT TPATNVKSTT TATTTTSDNA PKAIPFPISR PRFYPFAAAA AAAAHTNHPH 420 HHHHHHHQSA AS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MELGLSLGGE NPSKPFGFTA KANGSSENQN HPNNTNNKDS SSSAKLGLGF CMALGINNNS  60
NETRESRRNS ESKDNDGMDA DADDVDEDDD RTSSEHTRDD DDRRRGISVD TPLQLNLLPL  120
APVPRRTPIH TQPLRWSSDN GSSGSSGNVG LPVVGRGFDV NRVPAVGGVA EEVSSPNSVA  180
SSFQMDFSIF RGGGNLGNGG NKRDFGAAAG NDVVEAERTS SRASDEDENG LNTRKKLRLS  240
KEQSAYLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK  300
RCCETLTDEN RRLHKELQEL RALKTSNPFY MQLPATTLTM CPSCERVATT STTTAAAAAP  360
VPSTTTTTTT TPATNVKSTT TATTTTSDNA PKAIPFPISR PRFYPFAAAA AAAAHTNHPH  420
HHHHHHHQSA AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	239	TRKKLRL
2	283	291	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-70	HD-ZIP family protein