PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161335.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 322aa MW: 35961.6 Da PI: 4.8511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.6e-06	164	191	5	35
HHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS HLH 5 hnerErrRRdriNsafeeLrellPkaskaps 35 h +Er+RR+++ ++f L +l+P + ++ XP_027161335.1 164 HIVAERKRREQLSQRFVALSTLVPGL---KK 191 8899********************98...33 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MDNPVSSWFS ELGMEDSFFN DQYDVMDFLD EEFLNANLSP EGNTNSSTFI PISTCSTTLS 60 AFSAMDAPPI STERPAKQQK SDDLNSSSLG NIPNHHNQPM ILTFGNPVMP GEINPQQINL 120 EDDAVSEILK SHGSFVNLEE ATRSSQKRKK TGGRTRPASQ TYDHIVAERK RREQLSQRFV 180 ALSTLVPGLK KERVKTLEEQ AAKQNMESMV LVKRSQLLVE DEGSSDEMGG SDEQPLPEIE 240 AKLCNKNILL RVHCRNYRGV LVKILSEVEM LNLTVIHTSV APFGRLALDV TLMAEMEKEF 300 NLTMQELVKS IQSALQRGKQ GD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-42	bHLH family protein