PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161235.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 616aa MW: 64966.5 Da PI: 6.5454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	238	281	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e+ XP_027161235.1 238 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVEQ 281 69**************************************9985 PP
2	QLQ	52.5	1.4e-18	176	208	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTa Q+ +L++Q+++yKy++a++PvP++Ll++ XP_027161235.1 176 PFTAVQWKELERQAMIYKYMIASVPVPSDLLLP 208 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS 60 QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV 120 TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGG GGGLGMAAAS AALGFPFTAV 180 QWKELERQAM IYKYMIASVP VPSDLLLPAD PTAAPLLLGG SHGGGGSIYN LRYGNRDLEP 240 GRCKRTDGKK WRCSRDVAPH QKYCERHMHR GRPRSRKPVE QLQSSSVSPD DNPNNNISKK 300 SRLHHTSLHP NPTVAQPNNH SSPQFQGTGT IQQLKDPQLL DASIAFNSIF ASSCNYKESN 360 RVFGWAVDGE VMAANRVEQE SLHLMDTRRR EGLAPIRGYI YGTNASTLQQ GYGEEGPLNL 420 FSYATEIAYP GGIHSRNDEY YHAFLNSDLI ASKQPQIDQH CPPRGFIDAW SNGDLKTIDE 480 SSSVPSSKGY GLSPSSLTLS MAMAAGNALD EGMGLDEDSR PRMPTPKDSP VSWLPLIPGG 540 PLAEVLQPNS VACGSNPASP YASNGDSVSP PATTVSSPTG IFQRALFSHS DGSVCNSPTL 600 AASAAPPEVV AFQWLN

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS  60
QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV  120
TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGG GGGLGMAAAS AALGFPFTAV  180
QWKELERQAM IYKYMIASVP VPSDLLLPAD PTAAPLLLGG SHGGGGSIYN LRYGNRDLEP  240
GRCKRTDGKK WRCSRDVAPH QKYCERHMHR GRPRSRKPVE QLQSSSVSPD DNPNNNISKK  300
SRLHHTSLHP NPTVAQPNNH SSPQFQGTGT IQQLKDPQLL DASIAFNSIF ASSCNYKESN  360
RVFGWAVDGE VMAANRVEQE SLHLMDTRRR EGLAPIRGYI YGTNASTLQQ GYGEEGPLNL  420
FSYATEIAYP GGIHSRNDEY YHAFLNSDLI ASKQPQIDQH CPPRGFIDAW SNGDLKTIDE  480
SSSVPSSKGY GLSPSSLTLS MAMAAGNALD EGMGLDEDSR PRMPTPKDSP VSWLPLIPGG  540
PLAEVLQPNS VACGSNPASP YASNGDSVSP PATTVSSPTG IFQRALFSHS DGSVCNSPTL  600
AASAAPPEVV AFQWLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-31	GRF family protein