PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161234.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 617aa MW: 65039.6 Da PI: 6.5454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	239	282	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e+ XP_027161234.1 239 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVEQ 282 69**************************************9985 PP
2	QLQ	52.5	1.4e-18	176	208	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTa Q+ +L++Q+++yKy++a++PvP++Ll++ XP_027161234.1 176 PFTAVQWKELERQAMIYKYMIASVPVPSDLLLP 208 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS 60 QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV 120 TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGG GGGLGMAAAS AALGFPFTAV 180 QWKELERQAM IYKYMIASVP VPSDLLLPAD PTAAPSVLLG GSHGGGGSIY NLRYGNRDLE 240 PGRCKRTDGK KWRCSRDVAP HQKYCERHMH RGRPRSRKPV EQLQSSSVSP DDNPNNNISK 300 KSRLHHTSLH PNPTVAQPNN HSSPQFQGTG TIQQLKDPQL LDASIAFNSI FASSCNYKES 360 NRVFGWAVDG EVMAANRVEQ ESLHLMDTRR REGLAPIRGY IYGTNASTLQ QGYGEEGPLN 420 LFSYATEIAY PGGIHSRNDE YYHAFLNSDL IASKQPQIDQ HCPPRGFIDA WSNGDLKTID 480 ESSSVPSSKG YGLSPSSLTL SMAMAAGNAL DEGMGLDEDS RPRMPTPKDS PVSWLPLIPG 540 GPLAEVLQPN SVACGSNPAS PYASNGDSVS PPATTVSSPT GIFQRALFSH SDGSVCNSPT 600 LAASAAPPEV VAFQWLN

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS  60
QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV  120
TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGG GGGLGMAAAS AALGFPFTAV  180
QWKELERQAM IYKYMIASVP VPSDLLLPAD PTAAPSVLLG GSHGGGGSIY NLRYGNRDLE  240
PGRCKRTDGK KWRCSRDVAP HQKYCERHMH RGRPRSRKPV EQLQSSSVSP DDNPNNNISK  300
KSRLHHTSLH PNPTVAQPNN HSSPQFQGTG TIQQLKDPQL LDASIAFNSI FASSCNYKES  360
NRVFGWAVDG EVMAANRVEQ ESLHLMDTRR REGLAPIRGY IYGTNASTLQ QGYGEEGPLN  420
LFSYATEIAY PGGIHSRNDE YYHAFLNSDL IASKQPQIDQ HCPPRGFIDA WSNGDLKTID  480
ESSSVPSSKG YGLSPSSLTL SMAMAAGNAL DEGMGLDEDS RPRMPTPKDS PVSWLPLIPG  540
GPLAEVLQPN SVACGSNPAS PYASNGDSVS PPATTVSSPT GIFQRALFSH SDGSVCNSPT  600
LAASAAPPEV VAFQWLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	6e-35	GRF family protein