PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161232.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 613aa MW: 64811.4 Da PI: 6.5454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	235	278	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e+ XP_027161232.1 235 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVEQ 278 69**************************************9985 PP
2	QLQ	52.6	1.4e-18	172	204	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTa Q+ +L++Q+++yKy++a++PvP++Ll++ XP_027161232.1 172 PFTAVQWKELERQAMIYKYMIASVPVPSDLLLP 204 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS 60 QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV 120 TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGL GMAAASAALG FPFTAVQWKE 180 LERQAMIYKY MIASVPVPSD LLLPADPTAA PSVLLGGSHG GGGSIYNLRY GNRDLEPGRC 240 KRTDGKKWRC SRDVAPHQKY CERHMHRGRP RSRKPVEQLQ SSSVSPDDNP NNNISKKSRL 300 HHTSLHPNPT VAQPNNHSSP QFQGTGTIQQ LKDPQLLDAS IAFNSIFASS CNYKESNRVF 360 GWAVDGEVMA ANRVEQESLH LMDTRRREGL APIRGYIYGT NASTLQQGYG EEGPLNLFSY 420 ATEIAYPGGI HSRNDEYYHA FLNSDLIASK QPQIDQHCPP RGFIDAWSNG DLKTIDESSS 480 VPSSKGYGLS PSSLTLSMAM AAGNALDEGM GLDEDSRPRM PTPKDSPVSW LPLIPGGPLA 540 EVLQPNSVAC GSNPASPYAS NGDSVSPPAT TVSSPTGIFQ RALFSHSDGS VCNSPTLAAS 600 AAPPEVVAFQ WLN

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS  60
QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV  120
TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPGGGL GMAAASAALG FPFTAVQWKE  180
LERQAMIYKY MIASVPVPSD LLLPADPTAA PSVLLGGSHG GGGSIYNLRY GNRDLEPGRC  240
KRTDGKKWRC SRDVAPHQKY CERHMHRGRP RSRKPVEQLQ SSSVSPDDNP NNNISKKSRL  300
HHTSLHPNPT VAQPNNHSSP QFQGTGTIQQ LKDPQLLDAS IAFNSIFASS CNYKESNRVF  360
GWAVDGEVMA ANRVEQESLH LMDTRRREGL APIRGYIYGT NASTLQQGYG EEGPLNLFSY  420
ATEIAYPGGI HSRNDEYYHA FLNSDLIASK QPQIDQHCPP RGFIDAWSNG DLKTIDESSS  480
VPSSKGYGLS PSSLTLSMAM AAGNALDEGM GLDEDSRPRM PTPKDSPVSW LPLIPGGPLA  540
EVLQPNSVAC GSNPASPYAS NGDSVSPPAT TVSSPTGIFQ RALFSHSDGS VCNSPTLAAS  600
AAPPEVVAFQ WLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-32	GRF family protein