PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161056.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 278aa MW: 31275.4 Da PI: 9.5878

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.2e-08	24	70	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ a ++ + +W ++a++++ g++ ++++ +q + XP_027161056.1 24 KWTKEENKRFESALAMIDEKspdRWYRVAAMIP-GKSVCDVINQYQEL 70 8******************************.*********976 PP
2	Myb_DNA-binding	39.7	1.1e-12	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + + +G+g+W+ I+r + +t+ q+ s+ qky XP_027161056.1 122 PWTEEEHRRFLMGLQAHGKGDWRNISRNFVISKTPTQVASHAQKY 166 7***************************789*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
METLYPASYI VNSDLLLKEL KSTKWTKEEN KRFESALAMI DEKSPDRWYR VAAMIPGKSV 60 CDVINQYQEL VADVNDIEAG LVPVPGYLAS SFTLELMDNR GGFATFRKRG RSIDQERKKG 120 IPWTEEEHRR FLMGLQAHGK GDWRNISRNF VISKTPTQVA SHAQKYFLRQ LSGGKDKKRP 180 SIHDITTVQL PNKTPSEDNK SPSPDKSGLS PVQKSTNASN MLFDWNNSND GVLMVFDSLD 240 PNESLGSLFD IATQGRYAAG IRSANSKFHI QPTKYVLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	RKRGRSIDQERKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-88	MYB family protein