PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027160939.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 707aa    MW: 76906 Da    PI: 7.8898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027160939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3435e-1053387073374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + + ++A a+s+g +e+a+++L+rl + a+p+g++ qRl+ay+t AL++r++       +   p + +e  ++e+  ++++++evsP++k+++ +
  XP_027160939.1 338 QSIADVAVAISEGRMEAATEVLTRLAQVANPRGTSEQRLTAYMTSALRSRVNP-----TD-Y-PPPVTELYTAEHSDSTQMLYEVSPCFKLGFTA 425
                     567889**********************************************9.....22.2.2222334588999999**************** PP

            GRAS  98 aNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     aN aI ea++ge   +++H+iDfdi+qG+Q+  Ll+ La+ + ++p  l+iT+++++ ++  +e+l++++ +L+ +A++lgv ++ +v ++ r+ 
  XP_027160939.1 426 ANLAIQEAISGEqpaDKLHVIDFDIGQGGQYEHLLHLLATMKaDKPSVLKITTLVDSVNNgGEERLRAVRGNLEALANKLGVCLSLRV-TSLRIG 519
                     ************9999***********************665267779*****99987778**************************9.999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ e+L v+++EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv++veqe+  n+++F++r+ ea+ yy  l+dsl+a+++r+  +r
  XP_027160939.1 520 ELNREKLGVESDEALAVNFAFRLYRLPDESVTTENLRDELLRRVKWLSPKVVTLVEQEMGGNTAPFVTRVKEACAYYGLLLDSLDATVGRDRPDR 614
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + +E+  +gr++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++ ++ ++ l+ v   s+gy+v+e+sg +++gW++r+L+++SaWr
  XP_027160939.1 615 VRIEEG-VGRKLANSVACEGRDRVERCEVFGKWRARMSMAGFELKPMSQTVGDSLRSKLHSVTrgSQGYTVNEQSGGVCFGWMGRTLTVASAWR 707
                     ******.*****************************************************9988899**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    
MSSGFSGGGG PDFFTSSGIA TGRSTNPMMP TMNMNMNVTN PSQLPYRSAL AGILPDPAAQ  60
IVHRGPDLIG KRSLTEFQQQ HQLLQQQQQQ QQHQQQMGGL GPLYSNLRNV KPRVNYQHAS  120
PISPLSPVDL SVISSLSPEA SSISNSSSPM NPRYGRPILQ QFRPQQQLQQ PQPQPPRMMS  180
NCGLTTTASL SNGNIIQPAS SGGMPNRPNK FIPSNISSSS SVSFPNLFHN QRAVVPMPMS  240
VGMVTPGKQL FSAPQDQTEN KMMNKLQELE KQLFDDDDEG GCGGDAVSVV TNSEWSDTIH  300
SLNMITTTNC KAISPSPTSS SSSCSSTSAS PPIACPKQSI ADVAVAISEG RMEAATEVLT  360
RLAQVANPRG TSEQRLTAYM TSALRSRVNP TDYPPPVTEL YTAEHSDSTQ MLYEVSPCFK  420
LGFTAANLAI QEAISGEQPA DKLHVIDFDI GQGGQYEHLL HLLATMKADK PSVLKITTLV  480
DSVNNGGEER LRAVRGNLEA LANKLGVCLS LRVTSLRIGE LNREKLGVES DEALAVNFAF  540
RLYRLPDESV TTENLRDELL RRVKWLSPKV VTLVEQEMGG NTAPFVTRVK EACAYYGLLL  600
DSLDATVGRD RPDRVRIEEG VGRKLANSVA CEGRDRVERC EVFGKWRARM SMAGFELKPM  660
SQTVGDSLRS KLHSVTRGSQ GYTVNEQSGG VCFGWMGRTL TVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-145GRAS family protein