PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027158926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 483aa MW: 51844.6 Da PI: 8.3695 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.3e-16 | 307 | 353 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_027158926.1 307 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 353 6*************************8.....7******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence |
MNQCVPSWEL EENHHAPLPP PPPADPKQTL RAHSNSSSLA PDVPTLDYEV AELTWENGQL 60 AMHGLGLPRL PNGKSLAASP PAKYNSWEKQ PPVGGTLESI VNPAAIIATH RKSAAQSGCR 120 DCGDELVPWF EDHRRAARAP AAASLALTMD ALVPCNNSTR NDHREPSTHV PKISACPVGC 180 SSTCVGSCSA AAGNARLRRM SAAAAAAPME WGSKADQSAS GSATCGRDSR QVTLDTCDRE 240 FGTAAYTSTS FGSPENTSSG KQCTKTVDDQ DSPCQSRYER EAGNEEQKKK GNGKSSVSTK 300 RSRAAAVHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVNIMS 360 RMNMSPMMLP LALQQQLQMS MMASMGMGVN MGMGMGVMDL NSIGRSNIAG LPPLLHPTAY 420 MPATSAWDGL ADRLAASTSQ AMPDPLAAFL ACQSQPMTMD AYSRMAALYQ QFQQPPGPAS 480 KNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 312 | 317 | ERKRRD |
2 | 313 | 318 | RKRRDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 7e-77 | bHLH family protein |