PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158214.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 807aa    MW: 87075.7 Da    PI: 5.5412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-20108163156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+ q++eLe+ F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k
  XP_027158214.1 108 RKKYHRHTPFQIQELEASFKENPHPDEKARLELGRRLNLESKQVKFWFQNRRTQMK 163
                     7999*************************************************999 PP
2START170.11.5e-533155391206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k+a+ + p+W++s     e +n +e+ + f++  +     + +ea +a+g v+ +++ lve+l+d + +W+e +     +a+t+
  XP_027158214.1 315 ELAVAAMDELLKLAQIDNPLWFRSLdgfsETLNLEEYNRVFPPCVGtkpsnFVTEATKATGTVIINSTSLVEILMDPN-RWTELFScmigRASTI 408
                     57899********************999999999999999988655899999**************************.9***9999999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+++g      galqlm ae+q+lsplvp R++ f+R+++q+ +g w++vdvSvds +  p+ + +  +++lpSg+++++++ng+ kv+wveh+
  XP_027158214.1 409 DVVTDGtggtrnGALQLMHAEFQVLSPLVPvREVKFLRFCKQHAEGFWAVVDVSVDSIRGGPSAQIFSDCRRLPSGCIVQDMPNGYAKVIWVEHM 503
                     **************************************************************8888889************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h+ +r+l++sgl +ga++wvatl+rqce+
  XP_027158214.1 504 EYDDSNVHQSYRPLLRSGLGFGAQKWVATLERQCEC 539
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    
MSFGGFIGGG SSGGGGGDAG LMMADNLYST IPTSALAHTQ PHMVSPPPMK PKMEGAGDMG  60
LIGENFGPGD ADKSKEEEYE SRSGSDNIEG ASGDDQDTQG DKASSSGRKK YHRHTPFQIQ  120
ELEASFKENP HPDEKARLEL GRRLNLESKQ VKFWFQNRRT QMKTQMERHE NNMLKQENDK  180
LRIENIAMKE AMRNPVCSNC GGAAALGEIS IEEHHLRIEN ARLRDELSRI CGLANKFLGR  240
PLSSLASPIA PGNSDLELAV GRNAFAALSS VGTPVPMGLD FTSAVTNPLP ILPTIRSSMG  300
MTSFDVSIDK SMYLELAVAA MDELLKLAQI DNPLWFRSLD GFSETLNLEE YNRVFPPCVG  360
TKPSNFVTEA TKATGTVIIN STSLVEILMD PNRWTELFSC MIGRASTIDV VTDGTGGTRN  420
GALQLMHAEF QVLSPLVPVR EVKFLRFCKQ HAEGFWAVVD VSVDSIRGGP SAQIFSDCRR  480
LPSGCIVQDM PNGYAKVIWV EHMEYDDSNV HQSYRPLLRS GLGFGAQKWV ATLERQCECL  540
AVITSSTVPG GDHGVISPSG RRSIAKLAQR MTHNFCAGVC ATVYKWEVVQ VGNADEAKLV  600
MRKSMGNPGE PPGVVLSATS TVWMPVSEQR LFDFLRNEQT RSQWDVLSHD GAMQQMFHIA  660
KGQDLGNSIS LLRSSATSPN SNQNGMLILQ ETSTDVSGSL IVYAAVDIPA MNVVMSGGDS  720
SCVVLLPSGF SVVPDCYPDS AGPNSSSGNF AKEATAGGGS NGCLLTVGFQ ILVNSLPASK  780
LTLESIDTVN ALIGRTLQGI RSALECS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein