PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027157899.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 271aa MW: 30900.2 Da PI: 7.441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4e-12 | 84 | 136 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r+ h +Er+RR+++ + + Lr llP ++K s ++ + +Av+YIk+++ XP_027157899.1 84 KRAIHRDIERKRRQEMATLCAALRNLLPLeY---IKGKRSISDHVLEAVNYIKHME 136 7999*************************77...********************85 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence |
MDDYTANLVP LYEDDSLLFP TIHPYLEPTI CHQDLEIQGA SSLAACQQNT EEINTAGKRQ 60 RKSSSAIRAD NHDSGVNHDD SKQKRAIHRD IERKRRQEMA TLCAALRNLL PLEYIKGKRS 120 ISDHVLEAVN YIKHMEKNIR ELEAKRNKLR YLMGELSNTD VKNVEETNSS SIKFTVKPCL 180 GGGIEILMEN YSANNWFPLS RILDVLLDEG LTVVTCICTK VNANFLYRIQ TEASCMTDVD 240 LICLQKKLTE KVMAWKNFKS ENNTRTGTRF A |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 92 | 97 | ERKRRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-38 | bHLH family protein |