PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157898.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 343aa MW: 39429 Da PI: 6.5767

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	90	142	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r+ h +Er+RR ++ + + Lr llP+ ++K s ++ + +A++YIk+++ XP_027157898.1 90 KRAFHRDIERQRRLEMANLHASLRNLLPSeY---IKGKRSMSDHVLEAINYIKHME 142 7999***********************77...******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MDDFTKYMFP LQHDEILSFA PIPIIHPYLD PTIHHQDLEN QGASSLASHQ QNTEEIVINN 60 NVNKARKRQR KPASAIRDDQ NVKGRNPEQK RAFHRDIERQ RRLEMANLHA SLRNLLPSEY 120 IKGKRSMSDH VLEAINYIKH MEKNIGELEV KRDKLRNLTG ESSNLDSKRV NETNSLSITF 180 TVEPCSGGGF EILMKNYLTD NNWFPLSRIL DVLLDEGITV VNCVCTKVNE ECLYTIQTEV 240 LIVAGTSTTS RALSWVISLL LNHRHVLQKA QEEIDSFVGK ERWVEESDIK NLVYLQAIVK 300 ETMRLHPPAP VPMPRQADED FRIMFLQATH MSDVDLISLQ VLI

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MDDFTKYMFP LQHDEILSFA PIPIIHPYLD PTIHHQDLEN QGASSLASHQ QNTEEIVINN  60
NVNKARKRQR KPASAIRDDQ NVKGRNPEQK RAFHRDIERQ RRLEMANLHA SLRNLLPSEY  120
IKGKRSMSDH VLEAINYIKH MEKNIGELEV KRDKLRNLTG ESSNLDSKRV NETNSLSITF  180
TVEPCSGGGF EILMKNYLTD NNWFPLSRIL DVLLDEGITV VNCVCTKVNE ECLYTIQTEV  240
LIVAGTSTTS RALSWVISLL LNHRHVLQKA QEEIDSFVGK ERWVEESDIK NLVYLQAIVK  300
ETMRLHPPAP VPMPRQADED FRIMFLQATH MSDVDLISLQ VLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	102	KRAFHRDIERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	8e-35	bHLH family protein