PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157369.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 122aa MW: 13863.5 Da PI: 8.3559

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.7	6.3e-11	59	82	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++f rtG C+yGd+Ck+ H++ XP_027157369.1 59 GVCNRFVRTGSCQYGDSCKYYHPK 82 57********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence
MPLGKYYCDY CDKEFQDTAA ARKRHLQGVH HQRAKALWYD SLRSDANQIP APGALGKQGV 60 CNRFVRTGSC QYGDSCKYYH PKQNPNDQVL PDIQSECAYF MGQPTSILDA SSRSWISSFT 120 LY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	5e-32	C3H family protein