PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027157260.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 279aa    MW: 29559 Da    PI: 6.7792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027157260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13215260655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_027157260.1 215 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 260
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MQPAGGGGVG LSRGLGGGGG GGGGGGGGGL ARFRSAPATW LEALLENDDD NDVVLDPPVL  60
ASSSNKPPLH PPASSPVQST QQQSSAASSR YAADLGMLDT VGSGGGGLSG LLRQNSSPAE  120
LLSDGYFSNF GIPANYDNFL MSSLDVSSES PSKRPREADS NNPSPKASSQ VKGEQSEQLH  180
AGMGRLLDSE MEKLSEDAVL CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD  240
KQTNTADMLE EAVEYVKFLQ KQIQELKEQQ KKCKCFAKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-49bHLH family protein