PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157049.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 343aa MW: 39656.5 Da PI: 9.3819

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	97.7	1.2e-30	43	135	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d +++++isw+++g+s++vld+ +fa +vLpkyFkh+nf+SF+ QLn YgF+k+ ++ e+++k+F++g+++ll + XP_027157049.1 43 FLMKTFQMVKDTKTNNMISWNSEGTSLIVLDHLKFAAEVLPKYFKHNNFSSFIYQLNNYGFRKIGLRQ---------YEYENKWFQRGQEHLLMN 128 9*************************************************************9988.........78************ PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr++ e XP_027157049.1 129 IKRRNDE 135 **875 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MEVRGGGIAE NGGIVRPSSP LSKQASEKME FMKGVRDFTP PPFLMKTFQM VKDTKTNNMI 60 SWNSEGTSLI VLDHLKFAAE VLPKYFKHNN FSSFIYQLNN YGFRKIGLRQ YEYENKWFQR 120 GQEHLLMNIK RRNDEDPTIR KRRGPREQHV TAARPSMEAG LEIFEDHMNA LKKDITRSKY 180 HMGKLESSIA IFKKNVKRME AKSKVLIKVL ARIFNPALVE KIIQRMEEEP ELEILQTMKR 240 RRVILPQSSK TTTKSTDDGA CGMDQDDQEA NISMAESKKI ADQKLWKKFM GDDSVSEDES 300 EQQLLKQHSR IDMGFDDLMV SKIVNAKEPS LDVEDEVVVD LWT

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MEVRGGGIAE NGGIVRPSSP LSKQASEKME FMKGVRDFTP PPFLMKTFQM VKDTKTNNMI  60
SWNSEGTSLI VLDHLKFAAE VLPKYFKHNN FSSFIYQLNN YGFRKIGLRQ YEYENKWFQR  120
GQEHLLMNIK RRNDEDPTIR KRRGPREQHV TAARPSMEAG LEIFEDHMNA LKKDITRSKY  180
HMGKLESSIA IFKKNVKRME AKSKVLIKVL ARIFNPALVE KIIQRMEEEP ELEILQTMKR  240
RRVILPQSSK TTTKSTDDGA CGMDQDDQEA NISMAESKKI ADQKLWKKFM GDDSVSEDES  300
EQQLLKQHSR IDMGFDDLMV SKIVNAKEPS LDVEDEVVVD LWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	243	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	6e-41	HSF family protein