PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027156811.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 703aa MW: 78844.5 Da PI: 5.5777

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027156811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.9	9.4e-19	535	582	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027156811.1 535 ITREVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIARWPPRKERKV 582 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MWCQCLVQFW GLVKTGDKTH LTTCDLPFAL QYYPFNGSPV ASLLKLCEYR KHCLEYLIPV 60 DEDDDGDEVQ LIIGPPGRVF RSGLPEYAWN VGEYTSREYP QRDYAVGRVM RYWALPIYHH 120 PTRHLPIGVL EIVSPSDFIG LPRYRVLENL QNLLLAVNLT TTCVSLLTEV NSCQRGEIAI 180 IDEASSKVRK ICGLGYGVTK TWTISGEILS SHGGVDFIQK GQGVVGKAFS SKSACFCRDI 240 RQLSITEYPL VPNARYWKSS TCFAVCLQSS CSNNCTYVLE FFIPTYEKHS FGDLRTLLNS 300 LMESLKERLG SSFKIASGQE LGKKLAVEVI KVSPEDEFDS FEICSTTGIE STPRLGEVQG 360 GEGMMQLDFS SQQVDAENGS MNGIHKQQNG SVGSTPRLAK AQGGEGMMQL DFSSQQVDTA 420 NACINGVHGQ QNGIVGSPPR REPTQDFINI SYQELNLAGV DVAHNSMDGI YEQQNGIVRS 480 TTSQELVQNM VSIAHDEPIV EDPERDDAII EQSGNEVTNL KMQEPSCTLK SDLGITREVL 540 EQNSMRKLED AAKNIGVSRS TLKRICREYG IARWPPRKER KVNQVFAKQK VVQPATEYIE 600 ENHQSDATRL EDDISMWVIK AKYQEDKIKF ELSSSARKID LEKNIAQRFN LSLGSFKIKY 660 QDELNDWILI TCDTDLSFCM KTLSKLGYRL SHKLLNIQLN LVS

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MWCQCLVQFW GLVKTGDKTH LTTCDLPFAL QYYPFNGSPV ASLLKLCEYR KHCLEYLIPV  60
DEDDDGDEVQ LIIGPPGRVF RSGLPEYAWN VGEYTSREYP QRDYAVGRVM RYWALPIYHH  120
PTRHLPIGVL EIVSPSDFIG LPRYRVLENL QNLLLAVNLT TTCVSLLTEV NSCQRGEIAI  180
IDEASSKVRK ICGLGYGVTK TWTISGEILS SHGGVDFIQK GQGVVGKAFS SKSACFCRDI  240
RQLSITEYPL VPNARYWKSS TCFAVCLQSS CSNNCTYVLE FFIPTYEKHS FGDLRTLLNS  300
LMESLKERLG SSFKIASGQE LGKKLAVEVI KVSPEDEFDS FEICSTTGIE STPRLGEVQG  360
GEGMMQLDFS SQQVDAENGS MNGIHKQQNG SVGSTPRLAK AQGGEGMMQL DFSSQQVDTA  420
NACINGVHGQ QNGIVGSPPR REPTQDFINI SYQELNLAGV DVAHNSMDGI YEQQNGIVRS  480
TTSQELVQNM VSIAHDEPIV EDPERDDAII EQSGNEVTNL KMQEPSCTLK SDLGITREVL  540
EQNSMRKLED AAKNIGVSRS TLKRICREYG IARWPPRKER KVNQVFAKQK VVQPATEYIE  600
ENHQSDATRL EDDISMWVIK AKYQEDKIKF ELSSSARKID LEKNIAQRFN LSLGSFKIKY  660
QDELNDWILI TCDTDLSFCM KTLSKLGYRL SHKLLNIQLN LVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-36	Nin-like family protein