PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027156377.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 629aa MW: 72731.8 Da PI: 9.5801

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027156377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.7	4.4e-19	91	180	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY YA+ +GF vrk ++k ++g + r + C+keg+r+e++ + ++ r+++a+tr++C+a+lkv++++ ++k++v+++++ H H l+ XP_027156377.1 91 FYMMYARATGFGVRKWCKRKD-KKGIVRVRSWLCNKEGERHEKHLNrGDRIREPKAVTRVNCQAHLKVRLHEsKQKYVVAQFVSGHCHRLC 180 9***********9988887.7777************99885678899**************99***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MKQTGLRMRM VEGHLWSTRD VAASAEGEES GNRLKIVHST TNCTTEQILG EGAVGDIVGQ 60 DGPNVNAAFH YIDDIDVGSM EFDSIEEAEA FYMMYARATG FGVRKWCKRK DKKGIVRVRS 120 WLCNKEGERH EKHLNRGDRI REPKAVTRVN CQAHLKVRLH ESKQKYVVAQ FVSGHCHRLC 180 SPESVSFMRS HRKVGKSDLQ QAVLMQQAGI RTSHIMRLLA VQAGGYRNLG FHETDMYNAL 240 NRQRQVAVGD GDSDSALAFL LGKQRGDPNL FFKYSVDGHG RLNRLLWADS VCRDDYRCFG 300 DVLVFDSTYN TNQYRFPLVV LCGVNNHYST CIFACAFIVR EGDEGYDWVI STFLEAMNGR 360 KSIAVVTDGD KSMLKCIKKF MPTAKHRLCS FHLEMNAATN VRDKEFLQAF KTCMFMNSTT 420 INFETRWAGV VRRFRLENNE WVKKMYRKRE LWAMAFLRGN FFGGVRSTQR CEKMHQVLKL 480 HLTPKLKFFE CLQTYDLEVG RLRHEERRQR AVTEHTTLLG ATQLQALEKH AAELFTRSTF 540 VVVREEMKKQ GLFCMINGRD DGINAVHFMK HPYNYSYYTV VYNRSTRHMK CSCLKMETHG 600 LPCCHMFRAM LFEELKKIPP NCIMKRWTR

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MKQTGLRMRM VEGHLWSTRD VAASAEGEES GNRLKIVHST TNCTTEQILG EGAVGDIVGQ  60
DGPNVNAAFH YIDDIDVGSM EFDSIEEAEA FYMMYARATG FGVRKWCKRK DKKGIVRVRS  120
WLCNKEGERH EKHLNRGDRI REPKAVTRVN CQAHLKVRLH ESKQKYVVAQ FVSGHCHRLC  180
SPESVSFMRS HRKVGKSDLQ QAVLMQQAGI RTSHIMRLLA VQAGGYRNLG FHETDMYNAL  240
NRQRQVAVGD GDSDSALAFL LGKQRGDPNL FFKYSVDGHG RLNRLLWADS VCRDDYRCFG  300
DVLVFDSTYN TNQYRFPLVV LCGVNNHYST CIFACAFIVR EGDEGYDWVI STFLEAMNGR  360
KSIAVVTDGD KSMLKCIKKF MPTAKHRLCS FHLEMNAATN VRDKEFLQAF KTCMFMNSTT  420
INFETRWAGV VRRFRLENNE WVKKMYRKRE LWAMAFLRGN FFGGVRSTQR CEKMHQVLKL  480
HLTPKLKFFE CLQTYDLEVG RLRHEERRQR AVTEHTTLLG ATQLQALEKH AAELFTRSTF  540
VVVREEMKKQ GLFCMINGRD DGINAVHFMK HPYNYSYYTV VYNRSTRHMK CSCLKMETHG  600
LPCCHMFRAM LFEELKKIPP NCIMKRWTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-83	FAR1 family protein