PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027156316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26841.8 Da PI: 7.1036 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 33 | 84 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F+++ ++ + +LAk lgL+ rqV++WFqN+Ra++k XP_027156316.1 33 KRFSDEQVKSLESMFNREAKLEPMNKMQLAKDLGLQPRQVSIWFQNKRARWK 84 47*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.4 | 1.6e-37 | 32 | 122 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eqvk+LE++F++e kLep +K++la++Lglqprqv +WFqn+RAR+k+k+lE++y++Lk+++dal ++ e+L+ke+e+L e+l++ XP_027156316.1 32 AKRFSDEQVKSLESMFNREAKLEPMNKMQLAKDLGLQPRQVSIWFQNKRARWKSKKLEQEYRVLKANFDALCHQFEALKKENESLLEQLHT 122 69************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MEQTGYFEQE RWKPSNKHSP FPIPKRKRRN NAKRFSDEQV KSLESMFNRE AKLEPMNKMQ 60 LAKDLGLQPR QVSIWFQNKR ARWKSKKLEQ EYRVLKANFD ALCHQFEALK KENESLLEQL 120 HTLNGVLENS NKRQSSSKDS NENAEHTAPP KRDEHPERRE DDERTTKVNV DGVGVNEHFG 180 KEDQANFDIL TEQGESTSAS RKPWCNLVSD GLLDESCCPS SWWDFSDGLC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-39 | HD-ZIP family protein |