PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027156235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 305aa MW: 33892.7 Da PI: 7.1007 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.6 | 7.2e-27 | 41 | 128 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aC+aCk++r+kC+k+ C++ ++fpae++ f +vhk+FG+snv+k++k l+++e+e+a++sl +eA + +d v+G +g++++l++q XP_027156235.1 41 ACSACKHQRKKCKKEeCPMLKHFPAEKADIFSAVHKVFGVSNVSKIIKVLEPHEQERAVESLEWEALGWKKDKVHGPLGMYKTLEEQN 128 7***********9877********************************************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MLGMLDDDDN NSNNNNTTSN EDDNNKNNDK DNNLEVGNRP ACSACKHQRK KCKKEECPML 60 KHFPAEKADI FSAVHKVFGV SNVSKIIKVL EPHEQERAVE SLEWEALGWK KDKVHGPLGM 120 YKTLEEQNLL IIEKNQKLFE QNQKLQEENR SLKEGLRSMQ QSPTETCSNN AGVLAVQPGA 180 GNVMNYYHGS GSLSLEPGIT NAAQVSAARF LQDQRGREVL PIAAAAPYYD VNHAQAVLAN 240 MGSHHAGQSS RAGYSLANGL YSHYSTSHPS IDRRSINQVM PLFGYPSSQQ LQFINSGQRN 300 TPDNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 7e-23 | LBD family protein |