PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027155968.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 296aa MW: 32924.8 Da PI: 5.5305

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027155968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.8	1.8e-38	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lapyfpa+qpk f+n+hklFG+sn+lk+l+ l+++++ am+s++y+A++r + Pv+G++g+i++l q++ +++el+ XP_027155968.1 10 ACAACKYQRRRCTADCPLAPYFPADQPKMFQNAHKLFGVSNILKILRLLDPSQKLVAMKSIIYQANIRDKYPVHGCLGIIQQLWYQIQLAEEELQ 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_027155968.1 105 AIHAQL 110 999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MTLKGGTSQA CAACKYQRRR CTADCPLAPY FPADQPKMFQ NAHKLFGVSN ILKILRLLDP 60 SQKLVAMKSI IYQANIRDKY PVHGCLGIIQ QLWYQIQLAE EELQAIHAQL AFYRQHQQQE 120 VSTGLTDSIS QLQLGVAPPS NALSLFHQDA PQNYDNTVSA LPIGSHPTYS SNSANAANYN 180 ATYMDSKENN AVNSLWVQQP PYNNSSSNIN SNPMVMQSQL INSQPLIIQQ DCGTQDYDEM 240 HPFFDTLDDR QSYIASKEAY ESSSESSLKD TTQSVEHVAE NELKSAAACF SLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	9e-57	LBD family protein