PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027155882.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 298aa MW: 33712.9 Da PI: 5.0277

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027155882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	32	77	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+Er+RR+++ +++ eLr+l+P+ + ++Ka+i + A++YI +Lq XP_027155882.1 32 NLEAERKRRRKLSDRLLELRSLVPNI-----TNMNKATIITDAIDYIEELQ 77 5689*******************6.....58***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MAGLGDSAYD DYCASEEGNE CEDEHKEFKS KNLEAERKRR RKLSDRLLEL RSLVPNITNM 60 NKATIITDAI DYIEELQNTV RDLSDQLCQM DITLKEDLES QNKYVTDPAK EMKNWGIETE 120 VKVTRLNGAK LWIQVVFQKK IGGFTKLMEA ISVIGYDPKD VSVTTVKGAL CVTSCVEFLC 180 LMLGMNLSMD CRPLMDANKL VLRKERIAGL RDSATDLDAH EMVSATELQR TFIFVLHDRS 240 MNFMAAHLSL VNAVAYGFPD FMTKKEQLTG DCVNCIEDMT FALLPALPEH FLGRKKTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	43	ERKRRRKL
2	37	41	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	2e-26	bHLH family protein