PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027155879.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 420aa MW: 45706 Da PI: 6.7039

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027155879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	44.7	3.5e-14	1	30	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l efDe+krsCrrrLa+hn+rrrk+q+ XP_027155879.1 1 FHPLPEFDEGKRSCRRRLAGHNRRRRKTQP 30 9**************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
FHPLPEFDEG KRSCRRRLAG HNRRRRKTQP EDAASRVLLP GSSEKGINSD LDIVNLLAVL 60 ARAQGNTEDR GSTLPDKDQL LQILSKINAL PLPANLAAKL PIFSNLGRSV PNQVPSQNQS 120 HLDENSSPST MDLLRLLSGT PPVCAPNKME SEPERSSQGS DSEKTNSACS DQAACLNLNS 180 GPAMEFPCIG GERSCSSTQS PVDDSDCCVE EIHPHLPLQL FSSSPEDNCP PKLPASRKYF 240 SSDSSNPSEE RSPSYSPTVV QKLFPVKRGT LKQGNTSSDG DGDANSRAIR DAGCNTSLQL 300 FAGSSVGNDV GSIQSFPFQA GYTSSSGSDH SPSSLNSDTQ WLNAQLEMIM TFINPGSYGS 360 LSSIFARIPV IAMKDWKRRF PMASTARPEM KRKLYWHGWF GFELLHVMIF GASAEKSEER

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

FHPLPEFDEG KRSCRRRLAG HNRRRRKTQP EDAASRVLLP GSSEKGINSD LDIVNLLAVL  60
ARAQGNTEDR GSTLPDKDQL LQILSKINAL PLPANLAAKL PIFSNLGRSV PNQVPSQNQS  120
HLDENSSPST MDLLRLLSGT PPVCAPNKME SEPERSSQGS DSEKTNSACS DQAACLNLNS  180
GPAMEFPCIG GERSCSSTQS PVDDSDCCVE EIHPHLPLQL FSSSPEDNCP PKLPASRKYF  240
SSDSSNPSEE RSPSYSPTVV QKLFPVKRGT LKQGNTSSDG DGDANSRAIR DAGCNTSLQL  300
FAGSSVGNDV GSIQSFPFQA GYTSSSGSDH SPSSLNSDTQ WLNAQLEMIM TFINPGSYGS  360
LSSIFARIPV IAMKDWKRRF PMASTARPEM KRKLYWHGWF GFELLHVMIF GASAEKSEER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-29	SBP family protein