PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027155738.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-PHD

Protein Properties

Length: 883aa MW: 97875.9 Da PI: 4.6102

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027155738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.9	2.6e-11	713	757	12	56
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++L e F++n+yp++ +e LAk+lgL +qV+ WF N R + XP_027155738.1 713 VQRLLESFRENQYPKHGVKESLAKELGLRIQQVSKWFENARWSCR 757 68899************************************8776 PP
2	PHD	38.1	3.5e-13	341	396	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k XP_027155738.1 341 FCAKCGSkdLTLDNDIILCDGaCERGFHQFCLEPPLLKEDIPPDeeGWLCPGCDCK 396 699*965555****66**************999899*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence
MNMDVVRESS LSESHLSPEQ RALELGNGFV SGNRCTESVV QKCEMVKDAH IGPEETGIRK 60 SNANSVEILK TVDGLTNNSD FESFRLHNIQ YLPESANAEP LEQKQVVGDD NVDNRLTETE 120 IAAPDLTGLE EYIQISVSPC ENVAVVPAFA SLGSEPQDAS MHVDPQQTES TQKGAVNAGG 180 ESVLDKRTPF ESRKRKSTST IPVTARVLRS RSQEKSKESE KKDVVEDAAT EAYRRKRRKK 240 KQRRNIPVNE FSRIRAHLRY LLHRIKYEQN LIDAYSGEGW KGQSLEKIKP EKELQRAKSQ 300 IFRYKLKIRD LFRQIDLLLA EGKLPETLFD SDGQIDSEDI FCAKCGSKDL TLDNDIILCD 360 GACERGFHQF CLEPPLLKED IPPDEEGWLC PGCDCKVDCI ELLSDFQGSN LSVLDKWEKV 420 FPEEAAAAAS GMKMDDYSGL PSDDSDDDDY DPDKPEVDNM VLGEESSSDE SDYFSASEEP 480 VSAVKAEQIL GLPSDDSEDD DFDPSAADHG ELAKQESSSS DFSSDSEDFG AMFHEKELLG 540 EEAGHVSSVS TQSNLAVGSI GQIFKVGRDK RHSLSDELSF LLESNDAPVS GKRHVERLDY 600 KKLHEETYGD TSSDSSDEDY GETVGPRRRK KSTGKAILVP SNEPETIHKG ADIKDENCYQ 660 KDFEMTPVEK INKKFEIEGS NNMSVDSPRI STEGGSSGKR TGRPYQRLGD GIVQRLLESF 720 RENQYPKHGV KESLAKELGL RIQQVSKWFE NARWSCRHSS RMDSKTTGTT SINGTSLPEI 780 NEKVPKHGEQ SNLESATCDE EGKMALPQTN PCVEGQHIAG TGEGNSAIDF SPDSINGRCT 840 QVDDQKPDQL SSAEETSKQV SNVNASKSQS VRRSGRLQAR SGN

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence

MNMDVVRESS LSESHLSPEQ RALELGNGFV SGNRCTESVV QKCEMVKDAH IGPEETGIRK  60
SNANSVEILK TVDGLTNNSD FESFRLHNIQ YLPESANAEP LEQKQVVGDD NVDNRLTETE  120
IAAPDLTGLE EYIQISVSPC ENVAVVPAFA SLGSEPQDAS MHVDPQQTES TQKGAVNAGG  180
ESVLDKRTPF ESRKRKSTST IPVTARVLRS RSQEKSKESE KKDVVEDAAT EAYRRKRRKK  240
KQRRNIPVNE FSRIRAHLRY LLHRIKYEQN LIDAYSGEGW KGQSLEKIKP EKELQRAKSQ  300
IFRYKLKIRD LFRQIDLLLA EGKLPETLFD SDGQIDSEDI FCAKCGSKDL TLDNDIILCD  360
GACERGFHQF CLEPPLLKED IPPDEEGWLC PGCDCKVDCI ELLSDFQGSN LSVLDKWEKV  420
FPEEAAAAAS GMKMDDYSGL PSDDSDDDDY DPDKPEVDNM VLGEESSSDE SDYFSASEEP  480
VSAVKAEQIL GLPSDDSEDD DFDPSAADHG ELAKQESSSS DFSSDSEDFG AMFHEKELLG  540
EEAGHVSSVS TQSNLAVGSI GQIFKVGRDK RHSLSDELSF LLESNDAPVS GKRHVERLDY  600
KKLHEETYGD TSSDSSDEDY GETVGPRRRK KSTGKAILVP SNEPETIHKG ADIKDENCYQ  660
KDFEMTPVEK INKKFEIEGS NNMSVDSPRI STEGGSSGKR TGRPYQRLGD GIVQRLLESF  720
RENQYPKHGV KESLAKELGL RIQQVSKWFE NARWSCRHSS RMDSKTTGTT SINGTSLPEI  780
NEKVPKHGEQ SNLESATCDE EGKMALPQTN PCVEGQHIAG TGEGNSAIDF SPDSINGRCT  840
QVDDQKPDQL SSAEETSKQV SNVNASKSQS VRRSGRLQAR SGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	197	SRKRKS
2	234	240	RRKRRKK
3	234	242	RRKRRKKKQ
4	235	241	RRKRRKK
5	236	244	KRRKKKQRR
6	237	243	RRKKKQR
7	626	630	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-90	HB-PHD family protein