PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027155529.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 433aa MW: 46384.7 Da PI: 9.3002

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027155529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.5e-16	257	303	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_027155529.1 257 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 303 6***********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MADYVWKMGQ TAIMGLASRL PNGKSLAASP PAKYNSWEKQ PPVGGTLESI VNPAAIIATH 60 RKSAAQSGCR DCGDELVPWF EDHRRAARAP AAASLALTMD ALVPCNNSTR NDHREPSTHV 120 PKISACPVGC SSTCVGSCSA AAGNARLRRM SAAAAAAPME WGSKADQSAS GSATCGRDSR 180 QVTLDTCDRE FGTAAYTSTS FGSPENTSSG KQCTKTVDDQ DSPCQSRYER EAGNEEQKKK 240 GNGKSSVSTK RSRAAAVHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK 300 QLQAQVNIMS RMNMSPMMLP LALQQQLQMS MMASMGMGVN MGMGMGVMDL NSIGRSNIAG 360 LPPLLHPTAY MPATSAWDGL ADRLAASTSQ AMPDPLAAFL ACQSQPMTMD AYSRMAALYQ 420 QFQQPPGPAS KNK

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MADYVWKMGQ TAIMGLASRL PNGKSLAASP PAKYNSWEKQ PPVGGTLESI VNPAAIIATH  60
RKSAAQSGCR DCGDELVPWF EDHRRAARAP AAASLALTMD ALVPCNNSTR NDHREPSTHV  120
PKISACPVGC SSTCVGSCSA AAGNARLRRM SAAAAAAPME WGSKADQSAS GSATCGRDSR  180
QVTLDTCDRE FGTAAYTSTS FGSPENTSSG KQCTKTVDDQ DSPCQSRYER EAGNEEQKKK  240
GNGKSSVSTK RSRAAAVHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK  300
QLQAQVNIMS RMNMSPMMLP LALQQQLQMS MMASMGMGVN MGMGMGVMDL NSIGRSNIAG  360
LPPLLHPTAY MPATSAWDGL ADRLAASTSQ AMPDPLAAFL ACQSQPMTMD AYSRMAALYQ  420
QFQQPPGPAS KNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	267	ERKRRD
2	263	268	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-61	bHLH family protein