PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027155457.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 263aa    MW: 29954.7 Da    PI: 9.1498
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027155457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  v+q+G ++W++ ++  g+ R++k+c++rw +yl
   XP_027155457.1 14 KGPWTPEEDQILISFVQQYGHENWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding574.5e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++l
   XP_027155457.1  67 RGNFSKEEEETIIKLHQIMGNR-WSAIANRLP-GRTDNEIKNYWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MVRVPCCEKM GLKKGPWTPE EDQILISFVQ QYGHENWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEETIIK LHQIMGNRWS AIANRLPGRT DNEIKNYWHT HLKKRVHQDA  120
VGQKDLRQLQ TNLWRSNGQG TPESGEASNH PGSEGNGNVQ NFTGRIHENF SSLDYSISAP  180
GPAKQDSYQA FRVLAETNLK QSAKDSCKTN KYLGPASDSR LQFLSTGESI IEPGEDSIKE  240
DMVFWYNLFL NAGKSQEKFA QIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-74MYB family protein