PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154855.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 362aa MW: 39638.2 Da PI: 6.0127

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.4e-11	191	236	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++K ++L A+ Y+k+L+ XP_027154855.1 191 HIIAERKRREQLSQRFVALSAIVPGL-----KKMDKTSVLGDAITYLKHLK 236 899*********************.....9***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
CRKLQADLFE VMDNSATSWF SDLGMEDPFL SDQCDIMDFF DEDICAALGN DFQGSLPSES 60 NSPTCISHLI PRSSSTTALC NASSSAVEVP QPAANLCTSS AIEIPPGEVE RPARQLKRNR 120 STPVILTFGN PSPTETVHPR QVSLGGLNPE DDAVSEVLTS RVSFPNLEEA TKSAPAPKKG 180 RTRPASQTYD HIIAERKRRE QLSQRFVALS AIVPGLKKMD KTSVLGDAIT YLKHLKERVK 240 TLEEQATKQK MQSVVLVKKS QLVVEDEGSS DEQRPLPEIE AKLCDKKVLL RVHCENHRGL 300 LVKVLSEIEK LNLAVSNASV APFGSLALDI TIIAGMDKEF SLTMKELVQG LRSALQRAAR 360 DS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

CRKLQADLFE VMDNSATSWF SDLGMEDPFL SDQCDIMDFF DEDICAALGN DFQGSLPSES  60
NSPTCISHLI PRSSSTTALC NASSSAVEVP QPAANLCTSS AIEIPPGEVE RPARQLKRNR  120
STPVILTFGN PSPTETVHPR QVSLGGLNPE DDAVSEVLTS RVSFPNLEEA TKSAPAPKKG  180
RTRPASQTYD HIIAERKRRE QLSQRFVALS AIVPGLKKMD KTSVLGDAIT YLKHLKERVK  240
TLEEQATKQK MQSVVLVKKS QLVVEDEGSS DEQRPLPEIE AKLCDKKVLL RVHCENHRGL  300
LVKVLSEIEK LNLAVSNASV APFGSLALDI TIIAGMDKEF SLTMKELVQG LRSALQRAAR  360
DS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	200	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-49	bHLH family protein