PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027154640.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 264aa    MW: 30644.5 Da    PI: 10.1024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027154640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.6e-161189186
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                    ffkvl+p   + s+ l++p  f +++++  +e     l+ +sg++W+vk+  ++ +++y++t+GW +Fvk++gLk g+f+vF l+ 
  XP_027154640.1 11 FFKVLVP--GFYSK-LSIPPLFWKTFEHLLAE--SALLQIKSGETWSVKI--ERIGEQYLFTDGWPKFVKDHGLKMGEFLVFWLVL 89
                    6777733..44444.99*****9999766444..58888899********..******************************9773 PP
2B3382.9e-121802521287
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + r+ +  +fa++hg+++++  +++l++ +g sW+v+l+   ++ + ++ kGW +F + n L+ g    F+++ +
  XP_027154640.1 180 HRYRMNVKMPFAKKHGLVNKS--EVMLQNMNGASWRVELRLYDND-MLYMCKGWTDFLENNALELGQEYAFEFIPE 252
                     455788999*******99544..8***************655554.578888**************9999998753 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MTSKAKASPS FFKVLVPGFY SKLSIPPLFW KTFEHLLAES ALLQIKSGET WSVKIERIGE  60
QYLFTDGWPK FVKDHGLKMG EFLVFWLVLG KNNTTIFEVA MYGTTGCDKD LNPSAPIHDP  120
RHFVPQLVDQ LNPEINRNPL TQPSKSAVQG SRKRKSKKIR YDKRSLDAGK YYTKVLANYH  180
RYRMNVKMPF AKKHGLVNKS EVMLQNMNGA SWRVELRLYD NDMLYMCKGW TDFLENNALE  240
LGQEYAFEFI PETDSIRVQP FKKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156SRKRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.17e-23B3 family protein