PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027154518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 164aa MW: 18808.7 Da PI: 10.5919 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.8 | 2.7e-14 | 41 | 126 | 13 | 97 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 a++ ++ +P r+kki+k d+++k++ +ea l+s++ +lf+ l+ +s e+k++t+k + aav+r + dfl+d p XP_027154518.1 41 AEETHRPGIPTHRVKKIMKLDKEIKKVNSEAVFLISNSTQLFLQFLAEKSAQVVLEKKKKTIKLEHLRAAVKRHLpTSDFLLDSLP 126 444556679***************************************************************975389*****987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MHWSSEIPKQ KIESNSRNPH PNPFDLIRSP MMAEHEEQNA AEETHRPGIP THRVKKIMKL 60 DKEIKKVNSE AVFLISNSTQ LFLQFLAEKS AQVVLEKKKK TIKLEHLRAA VKRHLPTSDF 120 LLDSLPPPAQ PSDQLPKDRP RPRSSDKPVP PGSRRIDAFF NKCN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-34 | NF-YC family protein |